MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:217.5 nTPM
HPA Brain:150.6 nTPM
GTEx:217.5 nTPM
FANTOM5:78.7 Scaled Tags Per Million
Pig:97.2 nTPM
Mouse:14.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 150.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.4
1870 Female, age 42, unknown 138.7
2666 Male, age 74, left hemisphere 131.6
1830 Male, age 51, unknown 130.2
2828 Female, age 72, unknown 124.7
1833 Male, age 53, unknown 123.7
2586 Male, age 75, left hemisphere 109.1
2411 Female, age 72, unknown 109.0
2019 Male, age 18, unknown 98.0
2219 Male, age 76, both hemispheres 91.6
1827 Male, age 72, unknown 87.9
Dorsal raphe nucleus
nTPM: 94.6
2750 Male, age 76, both hemispheres 132.3
1828 Male, age 53, unknown 100.3
2016 Female, age 72, unknown 97.8
2047 Male, age 72, unknown 75.8
2298 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 85.7
2849 Male, age 72, unknown 109.8
1890 Male, age 53, unknown 86.1
1848 Female, age 42, unknown 86.0
2097 Female, age 72, unknown 60.9
Median raphe nucleus
nTPM: 116.2
2220 Male, age 76, midline 116.2
Periaquaductal grey, anterior
nTPM: 73.3
1795 Male, age 51, unknown 79.4
1947 Male, age 18, unknown 71.4
2502 Female, age 75, unknown 69.2
Periaquaductal grey, dorsal
nTPM: 83.9
2464 Female, age 72, unknown 92.6
2850 Male, age 76, both hemispheres 88.1
1831 Male, age 72, unknown 80.2
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 76.7
2053 Male, age 18, unknown 87.0
2140 Male, age 76, both hemispheres 75.4
2272 Male, age 74, both hemispheres 67.6
Pretectal area
nTPM: 77.0
1815 Male, age 53, unknown 94.4
2825 Male, age 18, unknown 88.8
2316 Male, age 76, right hemisphere 87.5
2407 Male, age 75, both hemispheres 82.4
1817 Female, age 42, unknown 80.8
2224 Female, age 72, unknown 78.9
2667 Female, age 75, unknown 72.6
2007 Male, age 72, unknown 70.6
1944 Female, age 72, unknown 65.4
1816 Male, age 51, unknown 64.5
2273 Male, age 74, both hemispheres 61.0
Red nucleus
nTPM: 150.6
2769 Male, age 72, unknown 187.8
2227 Male, age 72, unknown 175.4
1865 Male, age 51, unknown 163.0
2588 Male, age 74, left hemisphere 162.9
2503 Female, age 72, unknown 161.8
2823 Male, age 76, right hemisphere 160.0
1904 Male, age 53, unknown 145.7
1821 Female, age 72, unknown 137.3
1954 Female, age 42, unknown 136.1
2785 Male, age 18, unknown 131.0
2725 Female, age 75, unknown 130.7
2584 Male, age 75, left hemisphere 115.8
Substantia nigra
nTPM: 97.3
2699 Male, age 18, unknown 132.4
2583 Male, age 75, right hemisphere 129.9
2665 Male, age 74, both hemispheres 110.3
1851 Male, age 51, unknown 101.7
2590 Female, age 75, unknown 98.2
1916 Female, age 42, unknown 95.4
1889 Female, age 72, unknown 83.1
1941 Male, age 53, unknown 81.7
2409 Female, age 72, unknown 76.2
2241 Male, age 72, unknown 64.3
Superior colliculus
nTPM: 96.6
1913 Female, age 42, unknown 135.5
1995 Male, age 72, unknown 126.0
2668 Female, age 75, unknown 115.6
2587 Male, age 74, left hemisphere 106.2
1839 Male, age 51, unknown 93.4
1796 Male, age 53, unknown 93.1
1895 Male, age 76, right hemisphere 81.3
2664 Male, age 75, both hemispheres 77.9
2261 Male, age 18, unknown 68.5
2087 Female, age 72, unknown 68.1
Ventral tegmental area
nTPM: 110.1
2223 Female, age 72, unknown 177.8
2218 Male, age 76, both hemispheres 105.5
2410 Female, age 72, unknown 104.7
2021 Male, age 53, unknown 95.0
1915 Female, age 42, unknown 90.9
1942 Male, age 51, unknown 87.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 217.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 217.5
Samples: 139

Max nTPM: 838.0
Min nTPM: 47.6
Std nTPM: 126.6
Median nTPM: 182.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 838.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 735.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 649.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 622.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 497.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 468.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 448.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 445.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 422.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 421.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 420.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.7
FF:10158-103A5 76 years, female 78.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 97.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.1
Samples: 4

Max nTPM: 99.3
Min nTPM: 61.7
Sample A Female 99.3
Sample B Female 61.7
Sample C Male 92.8
Sample D Male 74.6
Midbrain
nTPM: 97.2
Samples: 4

Max nTPM: 112.2
Min nTPM: 84.8
Sample A Female 112.2
Sample B Female 84.8
Sample C Male 91.8
Sample D Male 100.1
Periaqueductal gray
nTPM: 81.9
Samples: 3

Max nTPM: 92.0
Min nTPM: 73.6
Sample B Female 80.1
Sample C Male 92.0
Sample D Male 73.6
Superior colliculi
nTPM: 90.4
Samples: 4

Max nTPM: 115.4
Min nTPM: 58.7
Sample A Female 115.4
Sample B Female 58.7
Sample C Male 92.6
Sample D Male 94.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.2
Sample A Male 15.1
Sample B Male 13.5
Sample C Female 12.2
Sample D Female 15.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69202358 Antisense, RP_050324_03_E03, Mouse strain C57BL/6J (56 days, male) 0.4
72340126 Antisense, RP_051101_02_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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