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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
546.1
nTPM
FANTOM5:
648.9
Scaled Tags Per Million
Pig:
166.1
nTPM
Allen mouse:
8.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
546.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 485.2
2301
Female, age 85, both hemispheres
606.2
2188
Female, age 91, both hemispheres
513.3
2090
Male, age 80, both hemispheres
469.1
1984
Male, age 76, both hemispheres
352.2
Dorsal cochlear nucleus nTPM: 444.9
2378
Male, age 80, both hemispheres
498.9
2187
Female, age 91, both hemispheres
492.9
2802
Male, age 74, right hemisphere
434.3
2370
Male, age 61, both hemispheres
432.5
2058
Male, age 76, both hemispheres
366.0
Dorsal tegmental nucleus nTPM: 546.1
2358
Male, age 61, both hemispheres
800.3
2326
Male, age 74, both hemispheres
506.4
2083
Male, age 80, both hemispheres
469.5
1936
Male, age 76, left hemisphere
408.1
Dorsolateral tegmental area nTPM: 464.4
2337
Male, age 61, both hemispheres
687.2
2654
Male, age 80, both hemispheres
486.6
2751
Female, age 85, both hemispheres
392.1
2141
Male, age 76, both hemispheres
389.8
2360
Male, age 74, both hemispheres
366.2
Kolliker-Fuse nucleus nTPM: 486.1
2793
Female, age 91, left hemisphere
541.6
2315
Male, age 76, right hemisphere
476.7
2163
Male, age 80, both hemispheres
440.2
Lateral lemniscal nuclei nTPM: 401.5
2169
Male, age 76, both hemispheres
439.7
2320
Female, age 91, left hemisphere
437.4
2746
Female, age 85, left hemisphere
379.3
2453
Male, age 74, right hemisphere
376.2
2036
Male, age 80, both hemispheres
375.0
Lateral parabrachial nucleus nTPM: 460.6
2792
Male, age 76, both hemispheres
542.4
2013
Male, age 80, both hemispheres
478.3
2139
Female, age 85, right hemisphere
420.9
2790
Male, age 61, both hemispheres
400.8
Lateral vestibular nucleus nTPM: 482.1
2311
Male, age 80, both hemispheres
556.2
2184
Male, age 76, both hemispheres
408.0
Locus coeruleus nTPM: 394.8
2720
Male, age 74, both hemispheres
506.2
2162
Male, age 80, both hemispheres
453.5
2123
Female, age 91, both hemispheres
413.2
1980
Male, age 76, both hemispheres
393.1
2014
Male, age 55, unknown
385.7
2317
Female, age 72, unknown
365.5
2788
Male, age 74, unknown
246.2
Medial parabrachial nucleus nTPM: 452.7
2170
Female, age 91, both hemispheres
539.9
2854
Male, age 80, both hemispheres
522.9
2156
Male, age 61, both hemispheres
473.1
2786
Male, age 76, both hemispheres
413.7
2463
Female, age 85, right hemisphere
313.7
Medial periolivary nuclei nTPM: 375.4
2458
Female, age 91, both hemispheres
425.8
2081
Male, age 80, both hemispheres
391.0
2171
Female, age 85, both hemispheres
385.7
2063
Male, age 76, both hemispheres
376.5
2791
Male, age 74, right hemisphere
297.9
Motor facial nucleus nTPM: 394.1
2697
Female, age 85, both hemispheres
497.1
2795
Female, age 91, both hemispheres
422.7
2365
Male, age 74, right hemisphere
400.7
2327
Male, age 80, both hemispheres
355.3
2126
Male, age 61, both hemispheres
347.5
2062
Male, age 76, both hemispheres
341.0
Motor trigeminal nucleus nTPM: 414.7
2335
Male, age 61, both hemispheres
456.8
2560
Male, age 74, both hemispheres
444.2
2321
Female, age 91, both hemispheres
439.8
2309
Male, age 76, both hemispheres
384.7
2079
Male, age 80, both hemispheres
348.2
Nuclei of the trapezoid body nTPM: 379.0
1983
Male, age 76, both hemispheres
484.5
2166
Male, age 80, both hemispheres
405.7
2368
Female, age 91, both hemispheres
368.2
2159
Male, age 61, both hemispheres
325.6
2735
Female, age 85, both hemispheres
310.8
Nucleus raphe magnus nTPM: 404.6
2051
Male, age 76, both hemispheres
492.6
2328
Male, age 80, both hemispheres
413.7
2455
Male, age 74, both hemispheres
399.7
2172
Female, age 85, both hemispheres
399.5
2459
Female, age 91, both hemispheres
385.7
2160
Male, age 61, both hemispheres
336.2
Paramedian reticular nucleus nTPM: 379.1
2052
Male, age 76, both hemispheres
406.6
2050
Female, age 85, both hemispheres
394.9
2057
Male, age 80, both hemispheres
363.0
2313
Male, age 61, both hemispheres
352.0
Pedunculopontine tegmental nucleus nTPM: 453.9
2338
Male, age 61, both hemispheres
537.8
2334
Male, age 80, both hemispheres
493.3
1921
Female, age 85, both hemispheres
330.7
Pontine nuclei nTPM: 425.4
2787
Female, age 85, both hemispheres
517.3
2319
Female, age 91, both hemispheres
503.8
1863
Male, age 55, unknown
474.9
1968
Male, age 76, left hemisphere
442.4
2454
Male, age 74, left hemisphere
421.9
2115
Male, age 80, left hemisphere
416.4
2109
Female, age 72, unknown
345.9
2727
Male, age 61, right hemisphere
280.6
Pontine raphe nucleus nTPM: 353.3
2122
Female, age 85, midline
358.9
2853
Male, age 76, midline
347.7
Posteroventral cochlear nucleus nTPM: 426.7
2341
Male, age 80, both hemispheres
467.6
2135
Female, age 91, both hemispheres
456.3
2371
Male, age 61, both hemispheres
446.9
2070
Male, age 76, both hemispheres
402.9
2752
Female, age 85, both hemispheres
359.7
Principal sensory trigeminal nucleus nTPM: 382.5
2367
Female, age 91, left hemisphere
456.5
2324
Male, age 76, both hemispheres
435.4
2158
Male, age 61, both hemispheres
338.7
2008
Male, age 80, left hemisphere
299.2
Reticular pontine nucleus, caudal nTPM: 414.7
2457
Female, age 91, both hemispheres
457.6
2092
Male, age 76, both hemispheres
440.1
2559
Male, age 74, both hemispheres
437.5
2332
Male, age 80, right hemisphere
323.5
Reticular pontine nucleus, oral nTPM: 447.4
2366
Female, age 91, both hemispheres
564.9
2167
Male, age 76, both hemispheres
489.5
1939
Male, age 80, both hemispheres
432.6
2012
Female, age 85, both hemispheres
378.8
2361
Male, age 74, both hemispheres
371.4
Reticulotegmental nucleus nTPM: 430.9
2452
Male, age 74, both hemispheres
510.1
2322
Female, age 91, both hemispheres
420.6
2333
Male, age 80, both hemispheres
419.4
2325
Male, age 76, both hemispheres
373.4
Spinal trigeminal nucleus, oral nTPM: 396.2
2164
Male, age 80, both hemispheres
458.2
1978
Male, age 76, both hemispheres
411.5
2737
Female, age 85, both hemispheres
319.0
Subcoeruleus area nTPM: 415.3
2451
Male, age 74, both hemispheres
501.3
2323
Female, age 91, left hemisphere
420.7
1958
Male, age 80, both hemispheres
419.5
2369
Female, age 85, left hemisphere
391.5
2089
Male, age 76, left hemisphere
343.7
Superior olive nTPM: 396.4
2561
Female, age 91, both hemispheres
466.8
2020
Male, age 76, both hemispheres
434.1
2329
Male, age 80, right hemisphere
386.6
2364
Male, age 74, right hemisphere
372.2
1875
Female, age 85, both hemispheres
322.2
Ventral periolivary nuclei nTPM: 413.5
2130
Female, age 85, both hemispheres
435.5
2023
Male, age 76, both hemispheres
421.7
2165
Male, age 80, both hemispheres
409.1
2794
Female, age 91, left hemisphere
387.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 435.6
2359
Male, age 61, both hemispheres
489.1
2840
Female, age 85, both hemispheres
475.8
2161
Male, age 80, both hemispheres
471.8
2456
Female, age 91, both hemispheres
407.9
1959
Male, age 76, both hemispheres
404.0
2449
Male, age 74, both hemispheres
365.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
166.1
Pig sample
Sample description
nTPM
Pons nTPM: 166.1
Samples: 4
Max nTPM: 190.1
Min nTPM: 119.5
Sample A
Female
179.1
Sample B
Female
119.5
Sample C
Male
175.7
Sample D
Male
190.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
