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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1250.4 nTPM
HPA Brain:514.3 nTPM
GTEx:1250.4 nTPM
FANTOM5:574.0 Scaled Tags Per Million
Pig:191.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

514.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 436.9
2565 Male, age 75, midline 606.5
1981 Female, age 72, midline 498.6
2816 Male, age 47, midline 387.7
2194 Female, age 79, both hemispheres 372.0
2048 Male, age 55, midline 319.4
Cervical spinal cord, dorsal horn
nTPM: 444.6
2069 Male, age 47, both hemispheres 501.3
2173 Female, age 72, unknown 482.8
2296 Male, age 66, both hemispheres 481.2
1877 Male, age 55, unknown 418.4
2721 Male, age 90, both hemispheres 397.4
2297 Male, age 75, both hemispheres 386.7
Cervical spinal cord, ventral horn
nTPM: 514.3
2480 Male, age 75, both hemispheres 771.9
2809 Male, age 90, both hemispheres 622.3
2098 Female, age 72, unknown 510.1
2068 Male, age 55, unknown 433.8
2295 Male, age 66, both hemispheres 430.7
2820 Female, age 79, both hemispheres 316.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1250.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1250.4
Samples: 159

Max nTPM: 2492.0
Min nTPM: 501.3
Std nTPM: 413.6
Median nTPM: 1176.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2492.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2428.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2297.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2219.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2213.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2167.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2164.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2125.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2116.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2046.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1999.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1967.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1922.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1910.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1907.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1907.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1890.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1772.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1768.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1740.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1713.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1693.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1684.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1652.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1650.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1647.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1642.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1627.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1616.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1611.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1611.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1598.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1588.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1584.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1578.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1566.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1558.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1544.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1537.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1525.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1507.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1505.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1497.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1442.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1432.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1414.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1387.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1381.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1358.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1356.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1351.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1348.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1343.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1329.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1322.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1316.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1310.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1302.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1300.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1295.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1278.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1271.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1247.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1241.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1240.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1236.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1233.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1230.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1228.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1225.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1222.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1220.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1217.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1195.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1195.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1189.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1187.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1186.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1177.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1176.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1175.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1168.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1165.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1158.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1151.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1144.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1132.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1127.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1125.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1124.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1119.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1119.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1113.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1107.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1092.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1089.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1084.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1082.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1077.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1072.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1063.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1062.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1056.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1051.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1048.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1047.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1044.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1040.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1030.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1029.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1026.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1022.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1000.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 988.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 980.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 975.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 974.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 969.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 963.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 961.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 961.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 961.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 961.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 958.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 950.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 944.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 935.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 918.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 914.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 901.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 877.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 875.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 871.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 865.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 864.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 858.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 857.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 830.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 824.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 805.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 791.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 790.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 786.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 782.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 759.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 742.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 739.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 730.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 726.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 693.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 688.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 673.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 625.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 606.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 595.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 591.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 579.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 503.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 501.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

574.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 574.0
FF:10159-103A6 76 years, female 593.7
FF:10181-103D1 60 years, female 554.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 191.6
Samples: 4

Max nTPM: 266.9
Min nTPM: 145.8
Sample A Female 145.8
Sample B Female 197.0
Sample C Male 266.9
Sample D Male 156.6
Ventral spinal cord
nTPM: 178.8
Samples: 4

Max nTPM: 205.9
Min nTPM: 160.2
Sample A Female 160.2
Sample B Female 173.6
Sample C Male 205.9
Sample D Male 175.6

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