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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1797.3 nTPM
GTEx:1797.3 nTPM
FANTOM5:1895.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA050459
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1797.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1797.3
Samples: 156

Max nTPM: 4808.1
Min nTPM: 861.1
Std nTPM: 583.4
Median nTPM: 1726.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4808.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3552.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3252.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3219.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3040.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3024.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2988.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2931.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2900.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2875.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2859.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2752.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2644.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2615.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2607.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2600.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2567.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2446.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2313.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2296.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2290.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2277.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2271.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2269.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2266.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2249.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2241.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2237.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2208.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2203.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2185.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2175.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2164.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2134.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2132.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2130.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2118.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2108.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2079.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2077.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2056.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2055.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2052.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2052.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2050.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2042.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2041.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2041.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2034.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2028.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2003.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1984.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1980.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1980.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1947.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1932.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1920.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1872.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1860.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1853.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1834.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1834.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1828.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1815.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1810.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1803.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1795.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 1790.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1789.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1769.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1748.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1747.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1747.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1742.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1742.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1741.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1734.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1728.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1723.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1710.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1695.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1695.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1694.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1691.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1683.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1679.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1653.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1642.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1629.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1620.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1618.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1590.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1590.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1588.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1548.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1536.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1524.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1523.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1520.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1510.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1506.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1495.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1468.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1468.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1452.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1451.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1449.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1448.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1445.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1439.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1432.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1424.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1416.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1396.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1395.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1394.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1392.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1388.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1385.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1371.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1363.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1351.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 1347.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1344.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1329.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1327.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1322.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1315.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1312.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1299.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1297.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1291.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1278.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1255.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1237.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1236.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1221.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1201.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1193.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1171.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1163.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1137.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1135.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1119.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1084.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1084.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1076.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1036.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1036.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1004.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 996.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 978.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 973.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 900.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 884.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 861.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1895.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1895.8
FF:10204-103F6 68 years, female 1895.8

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