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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1412.1 nTPM
HPA Brain:587.5 nTPM
GTEx:1412.1 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:1083.1 nTPM
Allen mouse:26.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

587.5
Sample id Sample description nTPM
Amygdala
nTPM: 587.5
2695 Female, age 67, right hemisphere 744.3
2514 Male, age 75, right hemisphere 620.0
2517 Female, age 94, left hemisphere 551.5
1987 Female, age 91, left hemisphere 527.9
2814 Male, age 76, right hemisphere 494.0
Basal amygdala
nTPM: 497.2
2827 Female, age 67, right hemisphere 700.9
2609 Male, age 75, right hemisphere 549.9
2110 Male, age 80, left hemisphere 515.0
2685 Female, age 94, left hemisphere 422.4
2243 Female, age 91, right hemisphere 407.3
1955 Male, age 76, both hemispheres 387.6
Central amygdala
nTPM: 559.2
2826 Female, age 94, left hemisphere 887.5
2515 Male, age 75, right hemisphere 577.7
2239 Male, age 80, left hemisphere 471.1
1905 Male, age 76, both hemispheres 454.0
2701 Female, age 91, right hemisphere 405.6
Corticomedial amygdala
nTPM: 453.6
2535 Female, age 67, right hemisphere 523.3
2428 Male, age 75, right hemisphere 494.4
2829 Male, age 80, left hemisphere 440.9
2242 Female, age 91, right hemisphere 433.6
2240 Male, age 76, both hemispheres 424.3
2429 Female, age 94, left hemisphere 405.0
Lateral amygdala
nTPM: 580.1
2830 Female, age 67, right hemisphere 900.9
2516 Male, age 75, right hemisphere 675.1
2534 Female, age 94, left hemisphere 613.4
2256 Male, age 80, left hemisphere 478.1
2255 Female, age 91, right hemisphere 416.4
1883 Male, age 76, both hemispheres 396.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1412.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1412.1
Samples: 152

Max nTPM: 3961.7
Min nTPM: 705.4
Std nTPM: 531.9
Median nTPM: 1250.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3961.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3272.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3219.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2879.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2842.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2780.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2744.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2422.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2363.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2363.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2339.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2237.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2208.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2175.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2161.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2153.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2040.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1954.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1947.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1922.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1903.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1902.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1880.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1828.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1800.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1777.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1772.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1759.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1747.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1741.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1723.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1702.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1685.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1657.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1656.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1641.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1615.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1592.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1526.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1514.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1510.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1510.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1509.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1507.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1503.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1491.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1485.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1485.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1474.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1461.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1459.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1458.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1458.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1454.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1449.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1448.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1447.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1425.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1420.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1396.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1394.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1390.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1389.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1381.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1348.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1346.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1343.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1341.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1337.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1336.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1328.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1306.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1286.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1284.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1261.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1256.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1244.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1241.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1241.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1236.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1234.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1234.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1225.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1207.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1203.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1202.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1199.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1197.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1195.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1189.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1185.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1184.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1181.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1175.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1165.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1163.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1158.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1150.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1150.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1148.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1137.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1135.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1131.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1129.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1127.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1123.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1118.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1107.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1101.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1098.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1097.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1085.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1077.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1076.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1055.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1043.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1037.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1034.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1032.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1025.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1024.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1019.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1013.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1003.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 999.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 997.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 993.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 985.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 981.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 979.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 950.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 948.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 933.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 932.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 917.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 917.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 916.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 910.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 910.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 898.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 884.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 874.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 873.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 870.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 868.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 862.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 847.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 790.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 769.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 736.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 727.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 705.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.4
FF:10151-102I7 76 years, female 19.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.3
Pig sample Sample description nTPM
Amygdala
nTPM: 12.3
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 14.2
Sample C Male 12.5
Sample D Male 12.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1083.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1083.1
Samples: 4

Max nTPM: 1160.0
Min nTPM: 1016.5
Sample A Male 1022.6
Sample B Male 1133.4
Sample C Female 1160.0
Sample D Female 1016.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.7
100143495 Antisense, RP_110407_01_F05, Mouse strain C57BL/6J (56 days, male) 26.7

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