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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:371.8 nTPM
GTEx:371.8 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:1223.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 371.8
Samples: 105

Max nTPM: 644.5
Min nTPM: 137.1
Std nTPM: 97.7
Median nTPM:
452_1 88 years, female 644.5
218_1 71 years, female 576.9
321_1 62 years, female 552.7
351_1 91 years, male 530.0
384_1 83 years, male 525.5
377_1 82 years, female 524.4
319_1 81 years, male 517.5
394_1 75 years, female 510.3
320_1 89 years, female 509.6
379_1 60 years, male 502.7
354_1 81 years, female 502.6
355_1 70 years, female 501.1
376_1 75 years, female 497.8
349_1 83 years, male 497.2
163_1 78 years, male 494.1
353_1 82 years, female 489.4
295_1 61 years, female 475.3
322_1 76 years, male 472.9
386_1 76 years, male 472.4
243_1 75 years, male 466.1
350_1 84 years, female 460.8
177_1 74 years, male 459.1
352_1 62 years, male 455.8
356_1 87 years, female 452.1
447_1 81 years, male 450.0
389_1 86 years, female 449.0
237_1 82 years, male 438.5
172_1 72 years, female 436.5
173_1 67 years, male 429.5
189_1 76 years, male 429.2
506_1 65 years, male 425.5
293_1 68 years, female 411.9
335_1 73 years, female 408.9
4_1 88 years, female 407.0
41_1 94 years, female 406.9
375_1 74 years, female 405.0
406_1 79 years, male 403.3
503_1 68 years, male 399.2
2_1 77 years, female 398.6
404_1 82 years, female 397.8
251_1 78 years, male 395.6
35_1 74 years, female 393.2
317_1 60 years, male 391.3
264_1 73 years, female 387.1
347_1 72 years, male 384.0
17_1 71 years, male 383.9
99_1 64 years, male 381.7
291_1 76 years, male 380.6
145_1 84 years, male 380.2
405_1 91 years, male 379.0
246_1 77 years, male 377.9
318_1 68 years, male 376.1
526_1 61 years, male 373.6
286_1 68 years, female 372.5
6_1 73 years, female 370.3
254_1 77 years, female 368.1
153_1 70 years, female 365.6
292_1 71 years, male 365.0
229_1 69 years, female 364.4
316_1 62 years, male 362.8
120_1 70 years, female 362.5
348_1 84 years, male 361.6
396_1 62 years, male 360.6
115_1 83 years, male 356.3
265_1 87 years, male 355.5
311_1 78 years, male 355.4
425_1 59 years, female 354.2
137_1 83 years, male 354.1
480_1 63 years, male 338.4
307_1 66 years, female 335.9
517_1 88 years, male 328.0
126_1 63 years, male 327.2
308_1 70 years, female 320.2
315_1 62 years, female 312.5
468_1 89 years, male 308.7
18_1 88 years, male 308.0
109_1 81 years, female 300.5
314_1 67 years, male 295.9
324_1 76 years, male 294.3
518_1 75 years, female 287.8
266_1 85 years, male 287.4
217_1 76 years, male 287.3
139_1 64 years, female 285.0
414_1 84 years, female 279.6
42_1 85 years, male 278.6
495_1 57 years, female 276.5
119_1 70 years, female 275.0
117_1 61 years, male 273.3
142_1 61 years, female 271.2
288_1 66 years, female 267.4
499_1 55 years, female 266.8
313_1 79 years, female 264.8
9_1 66 years, female 260.6
162_1 79 years, female 254.2
81_1 67 years, male 253.3
415_1 77 years, female 251.5
501_1 88 years, male 229.2
89_1 63 years, male 218.2
466_1 57 years, female 215.6
413_1 59 years, female 205.2
32_1 67 years, male 199.2
491_1 89 years, female 195.7
490_1 67 years, female 177.1
43_1 64 years, female 172.8
149_1 88 years, male 137.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 21.6
FF:10030-101E3 24-65 years, mixed 21.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.1
Pig sample Sample description nTPM
Retina
nTPM: 16.1
Samples: 4

Max nTPM: 19.8
Min nTPM: 12.8
Sample A Female 19.8
Sample B Female 14.0
Sample C Male 12.8
Sample D Male 17.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1223.0
Mouse sample Sample description nTPM
Retina
nTPM: 1223.0
Samples: 4

Max nTPM: 1457.7
Min nTPM: 1030.1
Sample A Male 1271.5
Sample B Male 1030.1
Sample C Female 1457.7
Sample D Female 1132.5

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