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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:956.5 nTPM
HPA Brain:479.5 nTPM
GTEx:956.5 nTPM
FANTOM5:199.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

479.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 335.0
1981 Female, age 72, midline 385.7
2194 Female, age 79, both hemispheres 360.4
2565 Male, age 75, midline 340.9
2048 Male, age 55, midline 327.0
2816 Male, age 47, midline 260.8
Cervical spinal cord, dorsal horn
nTPM: 341.9
2173 Female, age 72, unknown 507.2
2069 Male, age 47, both hemispheres 355.8
1877 Male, age 55, unknown 331.8
2296 Male, age 66, both hemispheres 310.1
2297 Male, age 75, both hemispheres 307.8
2721 Male, age 90, both hemispheres 238.9
Cervical spinal cord, ventral horn
nTPM: 479.5
2480 Male, age 75, both hemispheres 596.8
2809 Male, age 90, both hemispheres 583.9
2295 Male, age 66, both hemispheres 528.6
2068 Male, age 55, unknown 480.4
2820 Female, age 79, both hemispheres 374.5
2098 Female, age 72, unknown 312.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

956.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 956.5
Samples: 159

Max nTPM: 2864.2
Min nTPM: 279.9
Std nTPM: 408.5
Median nTPM: 887.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2864.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2120.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1996.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1975.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1961.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1958.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1777.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1764.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1736.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1734.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1690.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1625.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1624.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1590.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1587.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1569.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1568.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1558.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1477.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1440.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1420.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1397.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1354.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1338.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1317.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1279.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1256.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1235.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1223.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1205.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1201.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1197.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1190.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1178.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1176.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1163.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1163.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1154.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1154.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1131.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1129.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1128.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1123.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1109.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1103.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1079.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1074.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1067.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1066.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1063.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1061.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1059.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1058.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1056.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1054.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1039.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1038.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1017.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1015.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1009.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 988.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 984.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 984.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 982.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 974.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 970.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 967.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 963.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 962.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 946.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 946.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 935.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 926.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 913.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 902.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 898.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 896.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 896.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 888.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 887.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 886.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 882.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 881.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 874.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 867.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 854.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 850.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 844.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 841.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 838.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 834.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 826.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 822.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 820.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 816.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 807.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 794.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 773.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 768.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 762.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 759.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 759.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 757.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 754.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 753.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 752.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 737.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 729.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 705.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 697.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 697.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 684.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 680.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 679.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 676.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 676.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 672.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 668.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 656.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 652.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 643.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 641.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 634.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 633.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 633.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 629.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 628.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 620.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 613.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 610.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 610.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 609.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 606.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 597.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 591.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 589.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 589.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 582.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 576.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 570.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 533.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 525.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 525.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 517.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 516.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 514.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 489.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 484.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 478.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 477.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 472.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 435.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 430.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 427.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 415.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 401.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 312.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 298.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 279.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 199.3
FF:10181-103D1 60 years, female 249.9
FF:10159-103A6 76 years, female 148.7

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