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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:266.8 nTPM
HPA:266.8 nTPM
GTEx:142.4 nTPM
FANTOM5:218.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009672Antibody HPA027247Antibody CAB001962
Glandular cells HighHighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.8
overview
Male, age 65
Small intestine sample 232
nTPM: 296.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 307.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 221.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 241.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 142.4
Samples: 187

Max nTPM: 634.0
Min nTPM: 7.0
Std nTPM: 130.4
Median nTPM: 81.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 634.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 595.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 487.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 459.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 444.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 420.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 403.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 393.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 389.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 383.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 377.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 365.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 359.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 350.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 346.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 342.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 336.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 334.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 323.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 321.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 319.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 319.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 318.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 318.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 314.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 314.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 309.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 306.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 294.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 289.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 282.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 280.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 276.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 275.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 275.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 274.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 273.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 271.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 270.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 266.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 257.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 255.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 252.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 251.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 240.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 237.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 235.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 226.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 218.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 211.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 208.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 208.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 207.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 205.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 205.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 204.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 203.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 201.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 201.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 195.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 194.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 189.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 184.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 182.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 181.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 178.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 171.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 166.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 161.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 157.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 157.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 153.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 149.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 148.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 148.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 144.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 144.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 138.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 135.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 131.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 130.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 129.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 128.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 127.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 117.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 116.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 108.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 107.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 103.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 102.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 96.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 93.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 93.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 81.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 80.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 79.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 79.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 78.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 76.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 73.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 69.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 68.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 67.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 67.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 67.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 66.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 66.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 64.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 61.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 60.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 59.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 58.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 58.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 58.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 57.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 57.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 56.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 56.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 55.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 54.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 53.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 52.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 50.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 47.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 47.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 46.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 46.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 45.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 43.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 43.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 43.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 42.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 42.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 41.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 41.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 40.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 40.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 39.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 39.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 37.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 37.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 36.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 36.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 36.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 34.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 34.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 34.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 33.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 32.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 31.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 31.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 30.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 28.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 27.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 26.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 26.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 26.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 23.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 22.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 21.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 21.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 20.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 19.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 19.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 18.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 14.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 14.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 11.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 11.3
GTEX-1192X-2526-SM-59868 50-59 years, male 11.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 10.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 10.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 10.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 10.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 9.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 9.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 9.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 8.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 8.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 8.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 7.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

218.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 218.1
FF:10024-101D6 15,40,85 years, mixed 218.1

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