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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:168.5 nTPM
FANTOM5:178.8 Scaled Tags Per Million
Pig:198.7 nTPM
Allen mouse:1.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.5
Sample id Sample description nTPM
Area postrema
nTPM: 103.5
2054 Male, age 76, both hemispheres 121.2
2306 Male, age 80, both hemispheres 96.6
2799 Male, age 61, both hemispheres 92.8
Dorsal medullary reticular nucleus
nTPM: 141.7
2040 Female, age 85, both hemispheres 203.6
2373 Male, age 61, both hemispheres 118.5
2088 Male, age 76, both hemispheres 103.0
Dorsal motor vagal complex
nTPM: 124.6
2813 Female, age 72, unknown 158.2
2133 Female, age 91, both hemispheres 156.2
2000 Male, age 74, unknown 152.2
2844 Male, age 55, unknown 120.9
2643 Male, age 74, both hemispheres 116.0
2185 Male, age 76, both hemispheres 105.8
2807 Female, age 85, both hemispheres 95.3
2797 Male, age 61, both hemispheres 92.4
Gigantocellular reticular nuclei, medullary
nTPM: 141.8
1876 Female, age 85, both hemispheres 193.0
2022 Male, age 76, right hemisphere 163.7
2387 Female, age 91, both hemispheres 137.9
2314 Male, age 61, both hemispheres 124.9
2310 Male, age 80, both hemispheres 116.5
2462 Male, age 74, both hemispheres 114.6
Gigantocellular reticular nuclei, pars
nTPM: 124.6
2084 Female, age 85, both hemispheres 148.6
2336 Male, age 61, both hemispheres 140.6
2168 Male, age 76, both hemispheres 130.8
2706 Male, age 80, both hemispheres 102.7
2330 Male, age 80, both hemispheres 100.3
Inferior olive
nTPM: 126.8
2563 Male, age 74, both hemispheres 162.5
2085 Female, age 85, both hemispheres 128.6
2628 Female, age 91, both hemispheres 121.5
2178 Male, age 61, both hemispheres 116.8
2379 Male, age 80, both hemispheres 104.4
Lateral medullary reticular nucleus
nTPM: 145.9
2305 Male, age 74, both hemispheres 197.5
2044 Male, age 76, both hemispheres 167.2
2190 Female, age 85, both hemispheres 141.5
2374 Male, age 61, both hemispheres 138.9
2804 Female, age 91, both hemispheres 119.4
2852 Male, age 80, both hemispheres 110.6
Medial olivary nucleus
nTPM: 128.3
1962 Male, age 76, both hemispheres 134.3
1943 Male, age 61, both hemispheres 130.6
2138 Female, age 91, both hemispheres 125.2
2851 Male, age 80, both hemispheres 123.4
Medial vestibular nucleus
nTPM: 155.0
2801 Male, age 74, both hemispheres 173.8
2803 Female, age 91, both hemispheres 170.9
2134 Male, age 76, both hemispheres 151.6
2093 Male, age 80, both hemispheres 149.7
2743 Female, age 85, both hemispheres 142.9
2624 Male, age 61, both hemispheres 141.4
Motor hypoglossal nucleus
nTPM: 148.0
2461 Male, age 61, both hemispheres 181.6
2132 Female, age 85, both hemispheres 164.3
2125 Female, age 91, both hemispheres 153.1
2182 Male, age 80, both hemispheres 140.8
2277 Male, age 76, both hemispheres 100.2
Nucleus ambiguus
nTPM: 117.8
2071 Male, age 76, both hemispheres 122.7
2096 Female, age 85, both hemispheres 112.9
Nucleus cuneatus
nTPM: 107.9
2564 Male, age 74, both hemispheres 129.3
2380 Male, age 80, both hemispheres 117.1
2376 Male, age 61, both hemispheres 113.4
2381 Male, age 80, both hemispheres 113.4
2808 Female, age 85, both hemispheres 109.7
2131 Male, age 76, both hemispheres 107.2
2562 Male, age 61, both hemispheres 106.9
2100 Male, age 76, both hemispheres 93.5
2805 Female, age 91, both hemispheres 81.0
Nucleus gracilis
nTPM: 121.4
2627 Male, age 74, both hemispheres 164.5
2382 Male, age 80, both hemispheres 109.2
2299 Female, age 85, both hemispheres 90.5
Nucleus raphe obscurus
nTPM: 126.9
2845 Female, age 85, midline 146.8
2800 Male, age 61, midline 128.3
2142 Male, age 76, midline 105.6
Nucleus raphe pallidus
nTPM: 142.0
2183 Male, age 80, midline 158.6
1924 Male, age 61, midline 154.9
2145 Male, age 76, midline 112.4
Nucleus tractus solitarii
nTPM: 135.8
2144 Female, age 91, right hemisphere 199.3
2656 Male, age 76, both hemispheres 127.0
2191 Female, age 85, both hemispheres 122.2
2307 Male, age 80, both hemispheres 94.7
Parvicellular reticular nuclei
nTPM: 134.7
2119 Male, age 80, both hemispheres 148.7
2095 Male, age 76, both hemispheres 131.2
2558 Male, age 74, both hemispheres 124.2
Parvicellular reticular nuclei, medullary
nTPM: 150.7
2189 Female, age 91, both hemispheres 165.3
2181 Male, age 80, left hemisphere 147.3
2091 Female, age 85, both hemispheres 139.4
Peritrigeminal nucleus
nTPM: 139.4
2179 Male, age 61, both hemispheres 147.2
2136 Male, age 76, both hemispheres 142.2
2067 Female, age 85, both hemispheres 128.8
Prepositus hypoglossal nucleus
nTPM: 134.6
2855 Female, age 85, right hemisphere 157.0
2086 Male, age 80, both hemispheres 112.2
Spinal trigeminal nucleus, caudal
nTPM: 138.7
2390 Female, age 91, both hemispheres 176.4
2312 Male, age 61, both hemispheres 141.1
2642 Male, age 74, both hemispheres 129.8
2447 Male, age 76, both hemispheres 125.3
2308 Male, age 80, both hemispheres 120.7
Spinal trigeminal nucleus, interpolar
nTPM: 168.5
2625 Male, age 61, both hemispheres 213.0
2033 Male, age 80, both hemispheres 163.7
2066 Male, age 76, right hemisphere 162.9
2386 Female, age 85, both hemispheres 162.1
2389 Female, age 91, both hemispheres 141.0
Spinal vestibular nucleus
nTPM: 151.2
2806 Female, age 85, both hemispheres 170.3
2186 Female, age 91, both hemispheres 166.3
2780 Male, age 80, both hemispheres 152.5
2796 Male, age 61, both hemispheres 150.0
2748 Male, age 76, both hemispheres 149.2
2384 Male, age 74, both hemispheres 119.1
Superior vestibular nucleus
nTPM: 152.4
2383 Male, age 74, both hemispheres 183.0
2015 Male, age 80, both hemispheres 156.6
2061 Male, age 76, both hemispheres 117.5
Ventral medullary reticular nucleus
nTPM: 129.5
2060 Male, age 76, both hemispheres 136.6
2372 Male, age 61, both hemispheres 122.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 132.6
2741 Female, age 85, both hemispheres 162.7
1986 Male, age 76, both hemispheres 148.8
2180 Male, age 61, both hemispheres 131.7
2302 Female, age 91, both hemispheres 115.7
2118 Male, age 80, both hemispheres 104.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

178.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 178.8
FF:10174-103C3 60 years, female 210.5
FF:10038-101F2 18-64 years, mixed 172.9
FF:10155-103A2 76 years, female 153.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 198.7
Samples: 4

Max nTPM: 246.4
Min nTPM: 163.6
Sample A Female 246.4
Sample B Female 195.5
Sample C Male 189.4
Sample D Male 163.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.4
73512529 Antisense, RP_050913_01_A05, Mouse strain C57BL/6J (56 days, male) 1.4

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