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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:147.9 nTPM
HPA Brain:172.0 nTPM
GTEx:147.9 nTPM
FANTOM5:215.5 Scaled Tags Per Million
Pig:168.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 147.7
1981 Female, age 72, midline 181.1
2048 Male, age 55, midline 155.1
2565 Male, age 75, midline 145.6
2194 Female, age 79, both hemispheres 133.2
2816 Male, age 47, midline 123.5
Cervical spinal cord, dorsal horn
nTPM: 172.0
2173 Female, age 72, unknown 196.9
2296 Male, age 66, both hemispheres 192.3
2069 Male, age 47, both hemispheres 185.9
2297 Male, age 75, both hemispheres 158.7
1877 Male, age 55, unknown 153.6
2721 Male, age 90, both hemispheres 144.5
Cervical spinal cord, ventral horn
nTPM: 136.6
2098 Female, age 72, unknown 164.9
2068 Male, age 55, unknown 148.9
2480 Male, age 75, both hemispheres 134.3
2809 Male, age 90, both hemispheres 124.2
2295 Male, age 66, both hemispheres 123.9
2820 Female, age 79, both hemispheres 123.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 147.9
Samples: 159

Max nTPM: 234.5
Min nTPM: 92.6
Std nTPM: 28.9
Median nTPM: 146.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 234.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 222.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 214.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 211.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 208.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 200.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 199.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 199.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 198.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 192.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 190.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 190.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 189.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 188.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 186.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 183.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 181.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 180.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 180.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 180.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 179.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 179.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 178.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 177.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 176.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 175.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 175.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 174.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 172.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 172.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 170.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 169.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 169.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 168.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 168.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 167.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 167.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 167.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 166.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 165.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 165.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 165.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 165.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 162.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 159.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 159.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 157.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 155.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 154.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 154.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 153.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 153.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 153.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 153.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 153.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 151.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 151.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 151.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 151.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 150.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 148.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 148.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 147.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 147.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 147.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 146.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 146.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 145.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 144.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 144.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 144.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 143.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 143.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 142.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 142.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 141.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 141.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 140.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 139.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 139.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 139.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 139.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 138.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 138.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 137.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 136.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 135.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 134.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 132.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 129.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 129.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 129.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 127.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 127.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 125.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 125.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 125.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 125.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 124.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 122.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 120.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 119.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 119.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 118.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 118.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 118.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 117.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 117.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 116.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 116.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 115.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 114.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 114.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 113.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 111.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 111.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 111.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 111.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 110.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 110.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 106.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 104.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 102.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 99.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 96.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 92.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 92.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 215.5
FF:10181-103D1 60 years, female 265.3
FF:10159-103A6 76 years, female 165.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 168.8
Samples: 4

Max nTPM: 211.4
Min nTPM: 126.4
Sample A Female 211.4
Sample B Female 151.2
Sample C Male 126.4
Sample D Male 186.0
Ventral spinal cord
nTPM: 150.4
Samples: 4

Max nTPM: 154.6
Min nTPM: 147.1
Sample A Female 152.7
Sample B Female 154.6
Sample C Male 147.1
Sample D Male 147.1

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