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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:88.8 nTPM
HPA Brain:147.9 nTPM
GTEx:88.8 nTPM
FANTOM5:257.2 Scaled Tags Per Million
Pig:98.7 nTPM
Mouse:190.3 nTPM
Allen mouse:3.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Sample id Sample description nTPM
Amygdala
nTPM: 147.9
2814 Male, age 76, right hemisphere 170.9
2514 Male, age 75, right hemisphere 148.3
1987 Female, age 91, left hemisphere 144.6
2695 Female, age 67, right hemisphere 143.0
2517 Female, age 94, left hemisphere 132.5
Basal amygdala
nTPM: 134.8
2110 Male, age 80, left hemisphere 152.5
2243 Female, age 91, right hemisphere 148.3
1955 Male, age 76, both hemispheres 146.8
2609 Male, age 75, right hemisphere 138.8
2685 Female, age 94, left hemisphere 124.6
2827 Female, age 67, right hemisphere 97.8
Central amygdala
nTPM: 137.3
1905 Male, age 76, both hemispheres 146.4
2239 Male, age 80, left hemisphere 145.1
2515 Male, age 75, right hemisphere 138.1
2701 Female, age 91, right hemisphere 135.0
2826 Female, age 94, left hemisphere 121.9
Corticomedial amygdala
nTPM: 137.7
2240 Male, age 76, both hemispheres 162.1
2829 Male, age 80, left hemisphere 153.4
2242 Female, age 91, right hemisphere 147.7
2428 Male, age 75, right hemisphere 143.7
2429 Female, age 94, left hemisphere 132.0
2535 Female, age 67, right hemisphere 87.5
Lateral amygdala
nTPM: 127.2
1883 Male, age 76, both hemispheres 149.9
2516 Male, age 75, right hemisphere 143.9
2256 Male, age 80, left hemisphere 124.4
2830 Female, age 67, right hemisphere 122.3
2534 Female, age 94, left hemisphere 116.6
2255 Female, age 91, right hemisphere 106.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 88.8
Samples: 152

Max nTPM: 189.0
Min nTPM: 60.7
Std nTPM: 19.7
Median nTPM: 84.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 174.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 157.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 145.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 138.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 138.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 133.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 129.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 123.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 114.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 112.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 110.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 110.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 109.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 108.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 106.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 106.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 105.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 104.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 101.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 101.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 100.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 100.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 100.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 99.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 98.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 96.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 96.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 95.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 94.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 93.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 93.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 93.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 91.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 91.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 91.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 90.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 88.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 88.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 88.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 88.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 88.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 87.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 87.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 85.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 85.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 84.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 84.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 83.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 83.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 83.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 83.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 82.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 82.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 81.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 81.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 81.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 81.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 81.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 81.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 80.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 80.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 80.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 80.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 79.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 79.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 77.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 76.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 76.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 76.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 75.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 75.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 75.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 74.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 74.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 74.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 74.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 73.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 73.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 73.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 73.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 72.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 72.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 71.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 71.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 71.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 71.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 71.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 70.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 70.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 70.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 69.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 67.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 66.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 64.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 64.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 60.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 257.2
FF:10151-102I7 76 years, female 257.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.7
Pig sample Sample description nTPM
Amygdala
nTPM: 98.7
Samples: 4

Max nTPM: 118.2
Min nTPM: 82.9
Sample A Female 118.2
Sample B Female 105.0
Sample C Male 82.9
Sample D Male 88.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 190.3
Samples: 4

Max nTPM: 199.9
Min nTPM: 184.9
Sample A Male 186.9
Sample B Male 199.9
Sample C Female 184.9
Sample D Female 189.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.0
69015386 Antisense, RP_050310_02_H04, Mouse strain C57BL/6J (56 days, male) 3.0

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