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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:104.3 nTPM
HPA Brain:180.8 nTPM
GTEx:104.3 nTPM
FANTOM5:326.0 Scaled Tags Per Million
Pig:123.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 155.7
1981 Female, age 72, midline 180.8
2048 Male, age 55, midline 165.0
2565 Male, age 75, midline 150.5
2194 Female, age 79, both hemispheres 143.4
2816 Male, age 47, midline 138.8
Cervical spinal cord, dorsal horn
nTPM: 180.8
2296 Male, age 66, both hemispheres 201.5
2173 Female, age 72, unknown 194.5
2069 Male, age 47, both hemispheres 188.7
2297 Male, age 75, both hemispheres 178.8
2721 Male, age 90, both hemispheres 167.2
1877 Male, age 55, unknown 153.9
Cervical spinal cord, ventral horn
nTPM: 171.4
2098 Female, age 72, unknown 210.3
2480 Male, age 75, both hemispheres 192.2
2809 Male, age 90, both hemispheres 180.2
2295 Male, age 66, both hemispheres 162.7
2068 Male, age 55, unknown 148.3
2820 Female, age 79, both hemispheres 134.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 104.3
Samples: 159

Max nTPM: 203.4
Min nTPM: 72.9
Std nTPM: 19.8
Median nTPM: 100.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 203.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 165.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 164.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 161.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 158.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 150.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 145.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 144.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 140.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 136.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 136.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 135.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 133.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 131.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 131.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 130.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 127.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 126.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 121.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 120.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 118.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 118.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 117.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 117.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 117.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 116.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 116.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 115.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 115.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 114.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 112.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 112.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 112.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 111.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 111.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 111.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 110.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 110.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 109.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 108.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 108.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 108.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 107.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 107.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 107.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 106.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 105.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 105.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 104.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 104.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 103.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 103.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 103.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 103.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 103.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 103.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 102.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 102.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 101.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 101.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 101.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 101.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 101.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 100.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 100.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 100.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 100.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 99.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 99.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 99.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 99.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 99.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 99.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 98.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 98.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 98.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 98.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 97.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 97.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 96.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 96.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 95.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 94.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 94.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 94.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 93.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 93.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 93.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 93.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 93.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 93.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 92.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 92.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 92.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 91.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 91.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 91.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 91.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 91.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 90.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 90.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 90.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 90.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 90.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 89.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 88.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 88.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 86.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 86.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 86.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 85.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 84.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 84.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 84.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 84.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 83.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 83.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 83.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 82.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 81.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 80.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 78.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 78.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 76.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 72.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

326.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 326.0
FF:10181-103D1 60 years, female 343.7
FF:10159-103A6 76 years, female 308.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.6
Samples: 4

Max nTPM: 122.0
Min nTPM: 102.4
Sample A Female 102.4
Sample B Female 122.0
Sample C Male 109.0
Sample D Male 104.9
Ventral spinal cord
nTPM: 123.9
Samples: 4

Max nTPM: 130.6
Min nTPM: 118.1
Sample A Female 121.1
Sample B Female 130.6
Sample C Male 118.1
Sample D Male 125.9

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