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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2108.5 nTPM
HPA Brain:333.0 nTPM
GTEx:2108.5 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:382.4 nTPM
Mouse:694.9 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.0
Sample id Sample description nTPM
Amygdala
nTPM: 333.0
2695 Female, age 67, right hemisphere 403.3
2814 Male, age 76, right hemisphere 403.0
2514 Male, age 75, right hemisphere 330.6
1987 Female, age 91, left hemisphere 266.8
2517 Female, age 94, left hemisphere 261.0
Basal amygdala
nTPM: 236.9
2827 Female, age 67, right hemisphere 314.3
1955 Male, age 76, both hemispheres 248.6
2110 Male, age 80, left hemisphere 247.5
2609 Male, age 75, right hemisphere 233.3
2685 Female, age 94, left hemisphere 217.0
2243 Female, age 91, right hemisphere 161.0
Central amygdala
nTPM: 287.8
2826 Female, age 94, left hemisphere 419.4
1905 Male, age 76, both hemispheres 334.0
2515 Male, age 75, right hemisphere 309.7
2239 Male, age 80, left hemisphere 196.4
2701 Female, age 91, right hemisphere 179.4
Corticomedial amygdala
nTPM: 235.4
2428 Male, age 75, right hemisphere 265.0
2240 Male, age 76, both hemispheres 253.3
2829 Male, age 80, left hemisphere 248.6
2429 Female, age 94, left hemisphere 235.6
2535 Female, age 67, right hemisphere 221.0
2242 Female, age 91, right hemisphere 189.1
Lateral amygdala
nTPM: 293.8
2830 Female, age 67, right hemisphere 423.8
2516 Male, age 75, right hemisphere 373.7
2534 Female, age 94, left hemisphere 311.4
1883 Male, age 76, both hemispheres 280.0
2256 Male, age 80, left hemisphere 209.0
2255 Female, age 91, right hemisphere 164.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2108.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2108.5
Samples: 152

Max nTPM: 7572.8
Min nTPM: 910.2
Std nTPM: 1043.5
Median nTPM: 1833.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 7572.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6979.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6482.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5711.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4854.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4195.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4191.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3898.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3884.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3465.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3288.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3247.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3209.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3203.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3187.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3109.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3103.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2980.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2972.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2939.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2893.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2889.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2878.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2853.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2807.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2743.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2742.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2709.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2696.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2648.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2623.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2580.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2517.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2510.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2478.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2469.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2409.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2373.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2358.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2339.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2335.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2327.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2321.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2285.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2270.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2254.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2249.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2241.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2241.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2226.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2200.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2196.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2189.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2182.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2181.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2167.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2164.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2113.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2101.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2091.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2053.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2035.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2024.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2009.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2000.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1992.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1992.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1990.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1977.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1949.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1945.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1920.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1896.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1887.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1836.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1834.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1832.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1823.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1818.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1804.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1787.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1779.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1757.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1750.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1744.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1735.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1725.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1717.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1714.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1702.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1695.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1690.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1690.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1684.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1675.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1674.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1673.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1670.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1669.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1651.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1610.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1591.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1574.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1569.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1569.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1555.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1539.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1534.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1534.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1531.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1524.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1512.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1493.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1481.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1473.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1459.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1447.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1429.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1406.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1405.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1353.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1345.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1333.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1328.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1325.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1305.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1301.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1294.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1285.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1284.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1279.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1269.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1265.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1252.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1236.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1222.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1217.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1190.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1160.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1155.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1154.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1149.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1148.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1109.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1074.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1071.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1044.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1042.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1040.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 971.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 970.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 910.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.8
FF:10151-102I7 76 years, female 27.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.4
Pig sample Sample description nTPM
Amygdala
nTPM: 382.5
Samples: 4

Max nTPM: 505.0
Min nTPM: 217.1
Sample A Female 432.9
Sample B Female 505.0
Sample C Male 374.8
Sample D Male 217.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

694.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 694.9
Samples: 4

Max nTPM: 718.0
Min nTPM: 644.4
Sample A Male 644.4
Sample B Male 710.2
Sample C Female 718.0
Sample D Female 707.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
68744869 Antisense, RP_050208_01_G10, Mouse strain C57BL/6J (56 days, male) 5.3

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