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B3GAT1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.7 nTPM
HPA Brain:255.0 nTPM
GTEx:151.7 nTPM
FANTOM5:290.7 Scaled Tags Per Million
Pig:115.8 nTPM
Mouse:93.2 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.0
Sample id Sample description nTPM
Amygdala
nTPM: 177.9
2517 Female, age 94, left hemisphere 228.3
2814 Male, age 76, right hemisphere 178.0
2514 Male, age 75, right hemisphere 175.2
1987 Female, age 91, left hemisphere 158.7
2695 Female, age 67, right hemisphere 149.5
Basal amygdala
nTPM: 255.0
2827 Female, age 67, right hemisphere 310.3
2685 Female, age 94, left hemisphere 286.0
2243 Female, age 91, right hemisphere 253.5
2110 Male, age 80, left hemisphere 245.5
2609 Male, age 75, right hemisphere 222.8
1955 Male, age 76, both hemispheres 211.8
Central amygdala
nTPM: 202.2
2826 Female, age 94, left hemisphere 280.6
2239 Male, age 80, left hemisphere 246.1
2515 Male, age 75, right hemisphere 185.6
1905 Male, age 76, both hemispheres 163.5
2701 Female, age 91, right hemisphere 135.2
Corticomedial amygdala
nTPM: 228.7
2535 Female, age 67, right hemisphere 290.1
2829 Male, age 80, left hemisphere 255.4
2429 Female, age 94, left hemisphere 218.4
2242 Female, age 91, right hemisphere 216.7
2428 Male, age 75, right hemisphere 211.6
2240 Male, age 76, both hemispheres 180.0
Lateral amygdala
nTPM: 238.1
2534 Female, age 94, left hemisphere 302.8
2830 Female, age 67, right hemisphere 274.4
2256 Male, age 80, left hemisphere 270.3
2255 Female, age 91, right hemisphere 198.6
2516 Male, age 75, right hemisphere 196.5
1883 Male, age 76, both hemispheres 186.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.7
Samples: 152

Max nTPM: 324.9
Min nTPM: 2.9
Std nTPM: 49.0
Median nTPM: 146.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 324.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 287.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 274.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 247.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 244.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 232.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 228.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 222.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 222.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 222.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 218.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 217.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 216.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 216.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 215.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 214.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 211.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 210.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 209.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 208.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 202.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 202.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 198.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 196.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 196.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 191.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 186.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 184.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 182.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 178.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 174.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 173.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 171.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 171.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 170.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 169.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 169.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 167.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 166.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 165.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 164.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 163.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 160.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 158.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 158.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 158.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 156.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 155.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 154.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 154.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 154.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 153.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 152.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 151.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 151.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 150.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 149.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 149.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 148.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 147.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 147.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 146.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 145.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 145.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 144.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 144.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 144.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 143.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 143.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 142.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 142.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 142.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 141.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 137.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 136.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 135.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 134.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 133.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 132.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 131.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 130.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 130.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 130.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 129.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 129.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 129.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 126.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 124.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 124.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 124.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 123.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 120.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 117.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 116.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 114.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 113.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 112.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 110.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 107.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 106.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 105.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 102.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 101.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 99.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 98.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 88.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 88.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 86.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 74.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 73.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 67.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 52.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

290.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 290.7
FF:10151-102I7 76 years, female 290.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.8
Pig sample Sample description nTPM
Amygdala
nTPM: 115.9
Samples: 4

Max nTPM: 156.8
Min nTPM: 84.5
Sample A Female 156.8
Sample B Female 84.5
Sample C Male 116.6
Sample D Male 105.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 93.3
Samples: 4

Max nTPM: 99.2
Min nTPM: 88.6
Sample A Male 89.9
Sample B Male 95.3
Sample C Female 99.2
Sample D Female 88.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
73818755 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 5.9
71724822 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 5.2

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