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  • B3GAT1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:230.5 nTPM
FANTOM5:116.5 Scaled Tags Per Million
Pig:108.0 nTPM
Allen mouse:2.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.5
Sample id Sample description nTPM
Area postrema
nTPM: 143.0
2306 Male, age 80, both hemispheres 199.9
2799 Male, age 61, both hemispheres 118.0
2054 Male, age 76, both hemispheres 111.2
Dorsal medullary reticular nucleus
nTPM: 182.4
2088 Male, age 76, both hemispheres 205.8
2373 Male, age 61, both hemispheres 202.5
2040 Female, age 85, both hemispheres 139.0
Dorsal motor vagal complex
nTPM: 152.0
2185 Male, age 76, both hemispheres 247.9
2643 Male, age 74, both hemispheres 159.1
2797 Male, age 61, both hemispheres 156.9
2844 Male, age 55, unknown 136.1
2807 Female, age 85, both hemispheres 135.3
2133 Female, age 91, both hemispheres 134.0
2000 Male, age 74, unknown 131.2
2813 Female, age 72, unknown 115.4
Gigantocellular reticular nuclei, medullary
nTPM: 171.7
2314 Male, age 61, both hemispheres 250.6
2387 Female, age 91, both hemispheres 177.0
2022 Male, age 76, right hemisphere 166.2
1876 Female, age 85, both hemispheres 163.2
2310 Male, age 80, both hemispheres 160.9
2462 Male, age 74, both hemispheres 112.6
Gigantocellular reticular nuclei, pars
nTPM: 153.6
2336 Male, age 61, both hemispheres 196.5
2330 Male, age 80, both hemispheres 154.3
2084 Female, age 85, both hemispheres 145.0
2706 Male, age 80, both hemispheres 144.1
2168 Male, age 76, both hemispheres 128.3
Inferior olive
nTPM: 167.0
2178 Male, age 61, both hemispheres 208.5
2628 Female, age 91, both hemispheres 184.2
2563 Male, age 74, both hemispheres 149.9
2379 Male, age 80, both hemispheres 149.6
2085 Female, age 85, both hemispheres 142.6
Lateral medullary reticular nucleus
nTPM: 190.0
2852 Male, age 80, both hemispheres 234.1
2305 Male, age 74, both hemispheres 218.5
2374 Male, age 61, both hemispheres 197.6
2190 Female, age 85, both hemispheres 177.4
2044 Male, age 76, both hemispheres 158.2
2804 Female, age 91, both hemispheres 154.3
Medial olivary nucleus
nTPM: 197.9
1962 Male, age 76, both hemispheres 231.0
1943 Male, age 61, both hemispheres 217.4
2138 Female, age 91, both hemispheres 172.7
2851 Male, age 80, both hemispheres 170.4
Medial vestibular nucleus
nTPM: 160.0
2801 Male, age 74, both hemispheres 206.9
2803 Female, age 91, both hemispheres 178.8
2093 Male, age 80, both hemispheres 177.6
2624 Male, age 61, both hemispheres 176.2
2743 Female, age 85, both hemispheres 126.0
2134 Male, age 76, both hemispheres 94.7
Motor hypoglossal nucleus
nTPM: 169.0
2182 Male, age 80, both hemispheres 232.8
2125 Female, age 91, both hemispheres 210.0
2132 Female, age 85, both hemispheres 174.0
2461 Male, age 61, both hemispheres 125.9
2277 Male, age 76, both hemispheres 102.3
Nucleus ambiguus
nTPM: 229.4
2071 Male, age 76, both hemispheres 251.3
2096 Female, age 85, both hemispheres 207.5
Nucleus cuneatus
nTPM: 204.5
2380 Male, age 80, both hemispheres 241.2
2100 Male, age 76, both hemispheres 237.3
2381 Male, age 80, both hemispheres 215.5
2805 Female, age 91, both hemispheres 211.8
2376 Male, age 61, both hemispheres 200.0
2808 Female, age 85, both hemispheres 193.7
2564 Male, age 74, both hemispheres 193.0
2131 Male, age 76, both hemispheres 185.6
2562 Male, age 61, both hemispheres 162.0
Nucleus gracilis
nTPM: 209.8
2382 Male, age 80, both hemispheres 253.3
2299 Female, age 85, both hemispheres 188.7
2627 Male, age 74, both hemispheres 187.4
Nucleus raphe obscurus
nTPM: 230.5
2142 Male, age 76, midline 268.8
2845 Female, age 85, midline 217.2
2800 Male, age 61, midline 205.4
Nucleus raphe pallidus
nTPM: 213.5
2145 Male, age 76, midline 297.1
2183 Male, age 80, midline 178.1
1924 Male, age 61, midline 165.4
Nucleus tractus solitarii
nTPM: 100.8
2656 Male, age 76, both hemispheres 122.5
2307 Male, age 80, both hemispheres 113.2
2191 Female, age 85, both hemispheres 100.9
2144 Female, age 91, right hemisphere 66.4
Parvicellular reticular nuclei
nTPM: 174.9
2095 Male, age 76, both hemispheres 201.2
2119 Male, age 80, both hemispheres 178.6
2558 Male, age 74, both hemispheres 144.8
Parvicellular reticular nuclei, medullary
nTPM: 158.9
2189 Female, age 91, both hemispheres 179.3
2181 Male, age 80, left hemisphere 159.8
2091 Female, age 85, both hemispheres 137.7
Peritrigeminal nucleus
nTPM: 173.5
2067 Female, age 85, both hemispheres 176.1
2179 Male, age 61, both hemispheres 172.8
2136 Male, age 76, both hemispheres 171.6
Prepositus hypoglossal nucleus
nTPM: 157.0
2855 Female, age 85, right hemisphere 197.9
2086 Male, age 80, both hemispheres 116.1
Spinal trigeminal nucleus, caudal
nTPM: 194.6
2312 Male, age 61, both hemispheres 227.8
2308 Male, age 80, both hemispheres 214.4
2447 Male, age 76, both hemispheres 204.9
2642 Male, age 74, both hemispheres 175.0
2390 Female, age 91, both hemispheres 151.1
Spinal trigeminal nucleus, interpolar
nTPM: 137.7
2389 Female, age 91, both hemispheres 150.3
2033 Male, age 80, both hemispheres 149.9
2386 Female, age 85, both hemispheres 145.3
2066 Male, age 76, right hemisphere 123.9
2625 Male, age 61, both hemispheres 118.9
Spinal vestibular nucleus
nTPM: 189.3
2384 Male, age 74, both hemispheres 240.5
2748 Male, age 76, both hemispheres 227.2
2186 Female, age 91, both hemispheres 182.6
2806 Female, age 85, both hemispheres 176.9
2780 Male, age 80, both hemispheres 166.5
2796 Male, age 61, both hemispheres 142.0
Superior vestibular nucleus
nTPM: 143.7
2015 Male, age 80, both hemispheres 161.3
2061 Male, age 76, both hemispheres 148.2
2383 Male, age 74, both hemispheres 121.7
Ventral medullary reticular nucleus
nTPM: 216.0
2060 Male, age 76, both hemispheres 228.7
2372 Male, age 61, both hemispheres 203.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 170.9
2118 Male, age 80, both hemispheres 193.5
2180 Male, age 61, both hemispheres 180.0
1986 Male, age 76, both hemispheres 167.3
2741 Female, age 85, both hemispheres 158.3
2302 Female, age 91, both hemispheres 155.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 116.5
FF:10038-101F2 18-64 years, mixed 140.8
FF:10155-103A2 76 years, female 131.8
FF:10174-103C3 60 years, female 76.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 108.0
Samples: 4

Max nTPM: 121.5
Min nTPM: 93.6
Sample A Female 121.5
Sample B Female 93.6
Sample C Male 110.4
Sample D Male 106.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 2.0
73818755 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 2.0
71724822 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 1.5

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