We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HSPA8
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HSPA8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:446.2 nTPM
HPA Brain:655.7 nTPM
GTEx:446.2 nTPM
FANTOM5:1222.0 Scaled Tags Per Million
Pig:672.8 nTPM
Mouse:1505.9 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

655.7
Sample id Sample description nTPM
Amygdala
nTPM: 655.7
2814 Male, age 76, right hemisphere 735.3
2514 Male, age 75, right hemisphere 679.9
1987 Female, age 91, left hemisphere 663.3
2517 Female, age 94, left hemisphere 605.2
2695 Female, age 67, right hemisphere 594.9
Basal amygdala
nTPM: 523.1
2110 Male, age 80, left hemisphere 653.6
2609 Male, age 75, right hemisphere 599.3
2243 Female, age 91, right hemisphere 585.4
1955 Male, age 76, both hemispheres 549.3
2685 Female, age 94, left hemisphere 460.2
2827 Female, age 67, right hemisphere 290.8
Central amygdala
nTPM: 574.1
1905 Male, age 76, both hemispheres 648.8
2239 Male, age 80, left hemisphere 599.8
2515 Male, age 75, right hemisphere 598.7
2826 Female, age 94, left hemisphere 520.3
2701 Female, age 91, right hemisphere 502.8
Corticomedial amygdala
nTPM: 553.3
2829 Male, age 80, left hemisphere 669.0
2240 Male, age 76, both hemispheres 619.1
2428 Male, age 75, right hemisphere 609.3
2242 Female, age 91, right hemisphere 572.7
2429 Female, age 94, left hemisphere 521.1
2535 Female, age 67, right hemisphere 328.9
Lateral amygdala
nTPM: 502.4
1883 Male, age 76, both hemispheres 702.6
2516 Male, age 75, right hemisphere 606.1
2534 Female, age 94, left hemisphere 506.8
2256 Male, age 80, left hemisphere 456.5
2255 Female, age 91, right hemisphere 409.1
2830 Female, age 67, right hemisphere 333.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

446.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 446.2
Samples: 152

Max nTPM: 2072.0
Min nTPM: 210.0
Std nTPM: 233.2
Median nTPM: 392.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2072.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1583.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1207.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1101.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 935.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 842.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 831.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 808.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 791.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 786.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 736.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 718.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 714.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 681.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 673.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 661.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 641.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 630.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 628.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 598.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 590.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 589.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 577.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 571.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 569.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 565.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 560.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 560.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 558.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 558.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 553.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 550.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 548.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 539.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 537.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 529.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 524.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 523.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 516.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 507.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 503.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 497.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 492.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 475.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 472.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 471.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 469.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 468.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 467.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 454.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 451.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 451.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 444.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 443.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 442.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 440.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 435.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 428.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 426.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 424.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 424.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 419.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 417.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 416.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 416.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 413.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 412.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 411.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 407.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 406.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 405.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 403.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 400.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 399.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 399.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 395.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 389.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 387.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 383.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 383.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 381.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 379.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 378.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 372.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 371.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 371.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 366.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 358.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 357.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 355.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 355.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 349.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 349.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 347.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 344.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 344.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 344.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 343.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 341.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 339.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 338.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 335.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 334.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 332.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 330.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 329.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 328.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 327.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 325.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 325.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 322.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 316.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 315.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 313.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 312.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 311.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 310.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 309.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 309.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 305.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 303.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 302.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 300.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 296.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 296.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 294.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 292.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 291.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 290.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 283.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 279.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 279.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 278.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 273.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 272.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 269.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 262.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 262.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 252.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 252.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 248.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 237.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 234.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 230.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 229.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 219.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 215.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 215.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 212.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 212.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 210.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 210.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1222.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1222.0
FF:10151-102I7 76 years, female 1222.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

672.8
Pig sample Sample description nTPM
Amygdala
nTPM: 672.8
Samples: 4

Max nTPM: 911.6
Min nTPM: 557.4
Sample A Female 911.6
Sample B Female 614.2
Sample C Male 557.4
Sample D Male 607.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1505.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1505.9
Samples: 4

Max nTPM: 1560.2
Min nTPM: 1419.5
Sample A Male 1539.9
Sample B Male 1560.2
Sample C Female 1419.5
Sample D Female 1503.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
75694450 Antisense, RP_060518_03_G08, Mouse strain C57BL/6J (56 days, male) 26.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org