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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:868.1 nTPM
FANTOM5:1255.8 Scaled Tags Per Million
Pig:1429.0 nTPM
Mouse:1807.4 nTPM
Allen mouse:22.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

868.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 849.2
2396 Male, age 61, right hemisphere 1113.9
2032 Female, age 42, unknown 876.4
2497 Male, age 66, unknown 557.3
Centromedial thalamic nucleus
nTPM: 567.0
2401 Male, age 76, right hemisphere 808.1
2279 Female, age 85, left hemisphere 325.9
Habenula
nTPM: 761.9
1957 Male, age 80, both hemispheres 924.1
2203 Male, age 61, left hemisphere 857.0
2252 Male, age 62, unknown 643.4
2276 Male, age 66, unknown 623.0
Lateral geniculate body
nTPM: 868.1
2106 Female, age 67, right hemisphere 1191.4
1953 Male, age 62, unknown 1031.9
2575 Female, age 94, right hemisphere 1011.2
2035 Female, age 72, unknown 942.2
2399 Male, age 61, left hemisphere 906.4
2841 Male, age 80, both hemispheres 678.2
2659 Male, age 66, unknown 604.2
2857 Male, age 74, right hemisphere 579.7
Lateral thalamic nuclei
nTPM: 756.2
2573 Female, age 94, left hemisphere 978.9
2765 Female, age 67, both hemispheres 923.3
1903 Male, age 76, left hemisphere 693.8
2577 Male, age 74, both hemispheres 680.4
2661 Female, age 72, unknown 504.3
Medial dorsal thalamic nucleus
nTPM: 769.8
2572 Female, age 94, right hemisphere 1222.4
1971 Male, age 61, right hemisphere 946.4
2498 Male, age 66, unknown 848.3
1810 Male, age 48, unknown 812.2
1859 Male, age 76, both hemispheres 799.1
2026 Male, age 62, unknown 773.2
2402 Female, age 67, both hemispheres 761.7
1930 Female, age 42, unknown 741.1
2283 Male, age 80, right hemisphere 708.0
2039 Female, age 72, unknown 653.4
2492 Male, age 75, right hemisphere 652.3
2576 Male, age 74, both hemispheres 630.5
2660 Female, age 72, unknown 458.4
Medial geniculate body
nTPM: 684.2
2650 Female, age 94, left hemisphere 928.3
1811 Female, age 42, unknown 873.7
2657 Male, age 74, right hemisphere 662.2
2207 Male, age 80, right hemisphere 627.2
2571 Male, age 75, right hemisphere 587.0
2217 Female, age 72, unknown 583.9
2049 Male, age 76, both hemispheres 526.7
Nucleus reuniens
nTPM: 633.0
2212 Female, age 67, left hemisphere 913.2
2205 Male, age 80, left hemisphere 579.8
2210 Female, age 85, left hemisphere 405.9
Nucleus rhomboideus
nTPM: 578.9
2206 Male, age 80, both hemispheres 793.2
2213 Female, age 67, left hemisphere 573.5
2280 Female, age 85, left hemisphere 370.1
Posterior thalamic nucleus
nTPM: 763.4
2649 Female, age 94, both hemispheres 1185.7
2266 Male, age 76, right hemisphere 654.4
2495 Female, age 67, right hemisphere 626.2
2655 Male, age 74, right hemisphere 587.3
Pulvinar
nTPM: 764.8
1972 Male, age 62, unknown 1028.7
2398 Male, age 61, left hemisphere 891.1
1932 Male, age 80, right hemisphere 819.1
1899 Female, age 42, unknown 771.7
1929 Male, age 48, unknown 749.0
2496 Female, age 67, right hemisphere 707.5
2214 Male, age 76, right hemisphere 705.3
2499 Male, age 66, unknown 672.2
2724 Male, age 74, right hemisphere 670.1
2582 Female, age 72, unknown 633.2
Subthalamic nucleus
nTPM: 740.5
2275 Male, age 66, unknown 885.1
2406 Female, age 72, unknown 877.2
2124 Male, age 62, unknown 872.4
2282 Male, age 61, both hemispheres 819.6
2658 Male, age 74, both hemispheres 753.4
2779 Female, age 42, unknown 667.4
2056 Female, age 72, unknown 566.7
2216 Male, age 48, unknown 482.4
Ventral posterolateral thalamic nucleus
nTPM: 708.2
2397 Male, age 61, right hemisphere 886.3
2740 Male, age 76, right hemisphere 835.6
2197 Male, age 80, both hemispheres 731.0
2578 Male, age 74, both hemispheres 714.7
2570 Male, age 75, right hemisphere 706.7
2581 Female, age 72, unknown 374.6
Ventral posteromedial thalamic nucleus
nTPM: 717.9
2202 Male, age 61, left hemisphere 929.8
2653 Male, age 74, both hemispheres 745.6
2281 Male, age 75, right hemisphere 698.0
2758 Male, age 80, both hemispheres 674.7
2127 Male, age 76, right hemisphere 541.4
Ventral thalamic nuclei
nTPM: 689.2
1845 Male, age 48, unknown 954.8
1860 Male, age 76, both hemispheres 823.3
1912 Female, age 42, unknown 714.8
2580 Male, age 66, unknown 694.5
2285 Male, age 62, unknown 630.3
2652 Male, age 74, left hemisphere 628.4
2204 Male, age 80, both hemispheres 607.2
2291 Female, age 72, unknown 590.0
2858 Female, age 72, unknown 559.7
Zona incerta
nTPM: 608.8
2215 Male, age 66, unknown 816.3
2822 Male, age 74, right hemisphere 633.7
2208 Male, age 80, right hemisphere 591.7
2403 Male, age 62, unknown 573.5
2663 Female, age 72, unknown 429.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1255.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1255.8
FF:10154-103A1 76 years, female 1255.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1429.0
Pig sample Sample description nTPM
Thalamus
nTPM: 1429.0
Samples: 4

Max nTPM: 1843.9
Min nTPM: 1025.4
Sample A Female 1843.9
Sample B Female 1025.4
Sample C Male 1723.2
Sample D Male 1123.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1807.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 1807.5
Samples: 4

Max nTPM: 1955.0
Min nTPM: 1570.7
Sample A Male 1570.7
Sample B Male 1955.0
Sample C Female 1756.6
Sample D Female 1947.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 22.2
75694450 Antisense, RP_060518_03_G08, Mouse strain C57BL/6J (56 days, male) 22.2

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