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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:516.2 nTPM
FANTOM5:1319.5 Scaled Tags Per Million
Pig:913.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052504Antibody CAB002056
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 516.2
Samples: 246

Max nTPM: 2166.5
Min nTPM: 255.6
Std nTPM: 223.5
Median nTPM: 464.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2166.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1541.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1425.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1327.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1266.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1236.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1123.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1116.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 980.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 974.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 935.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 914.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 871.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 857.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 834.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 819.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 815.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 815.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 787.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 784.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 764.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 761.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 755.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 749.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 749.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 738.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 728.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 726.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 725.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 724.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 693.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 689.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 688.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 682.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 681.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 678.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 676.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 674.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 670.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 666.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 654.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 640.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 637.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 633.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 631.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 630.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 626.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 622.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 620.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 616.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 614.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 606.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 605.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 601.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 599.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 597.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 596.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 583.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 580.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 579.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 579.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 577.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 577.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 572.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 566.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 564.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 561.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 549.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 549.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 547.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 543.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 543.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 540.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 538.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 536.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 536.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 534.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 533.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 533.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 532.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 532.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 530.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 530.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 526.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 526.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 524.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 520.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 518.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 515.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 514.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 514.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 503.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 501.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 501.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 500.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 498.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 498.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 495.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 494.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 491.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 489.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 488.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 488.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 487.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 486.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 485.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 479.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 477.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 476.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 475.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 474.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 474.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 473.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 473.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 473.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 470.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 469.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 469.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 467.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 465.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 465.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 465.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 464.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 463.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 462.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 460.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 458.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 457.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 457.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 456.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 454.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 453.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 451.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 450.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 449.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 447.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 447.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 444.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 442.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 442.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 441.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 440.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 440.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 437.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 437.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 436.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 435.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 434.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 433.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 431.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 430.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 427.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 427.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 425.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 425.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 423.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 421.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 420.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 417.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 413.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 412.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 412.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 406.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 405.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 405.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 404.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 402.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 401.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 400.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 400.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 399.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 399.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 399.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 397.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 397.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 395.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 395.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 394.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 393.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 392.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 389.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 389.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 388.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 387.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 385.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 384.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 383.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 380.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 379.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 379.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 378.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 378.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 377.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 374.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 374.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 373.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 372.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 371.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 369.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 367.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 367.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 366.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 366.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 366.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 365.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 364.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 359.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 354.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 354.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 353.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 350.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 350.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 350.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 349.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 349.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 344.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 341.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 334.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 333.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 332.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 330.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 329.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 325.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 322.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 319.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 318.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 317.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 316.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 314.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 311.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 310.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 306.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 306.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 303.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 296.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 295.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 288.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 273.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 271.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 270.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 270.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 269.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 265.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 262.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 255.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1319.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1319.5
FF:10164-103B2 76 years, female 1319.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

913.2
Pig sample Sample description nTPM
Caudate
nTPM: 913.2
Samples: 4

Max nTPM: 963.1
Min nTPM: 862.8
Sample A Female 862.8
Sample B Female 929.6
Sample C Male 963.1
Sample D Male 897.2

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