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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:440.8 nTPM
HPA:440.8 nTPM
GTEx:397.8 nTPM
FANTOM5:1061.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052504Antibody CAB002056
Glandular cells Not detectedLow



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

440.8
overview
Male, age 65
Small intestine sample 232
nTPM: 480.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 461.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 359.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 461.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 397.8
Samples: 187

Max nTPM: 983.5
Min nTPM: 140.6
Std nTPM: 132.9
Median nTPM: 380.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 983.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 952.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 801.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 800.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 693.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 666.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 643.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 642.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 637.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 632.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 631.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 630.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 615.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 610.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 595.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 593.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 588.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 587.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 578.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 577.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 565.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 557.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 557.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 537.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 535.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 523.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 512.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 509.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 508.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 502.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 498.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 489.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 489.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 485.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 484.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 483.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 480.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 480.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 479.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 479.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 474.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 474.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 470.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 470.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 469.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 468.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 465.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 465.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 465.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 465.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 461.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 461.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 456.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 455.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 447.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 445.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 444.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 441.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 439.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 437.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 437.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 433.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 431.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 430.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 426.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 426.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 425.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 421.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 418.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 418.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 417.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 413.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 412.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 411.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 410.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 403.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 403.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 401.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 400.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 395.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 394.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 391.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 387.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 387.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 387.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 387.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 386.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 386.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 385.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 385.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 384.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 383.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 381.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 380.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 378.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 378.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 375.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 372.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 371.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 368.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 366.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 366.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 365.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 362.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 360.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 360.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 356.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 354.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 354.3
GTEX-1192X-2526-SM-59868 50-59 years, male 353.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 353.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 353.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 352.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 352.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 351.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 350.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 349.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 349.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 348.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 347.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 347.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 343.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 343.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 342.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 339.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 333.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 332.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 325.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 325.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 324.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 323.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 319.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 319.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 319.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 314.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 314.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 313.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 313.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 312.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 310.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 309.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 307.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 301.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 300.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 295.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 294.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 289.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 289.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 288.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 287.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 287.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 287.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 287.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 285.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 279.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 278.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 278.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 277.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 277.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 276.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 273.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 267.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 263.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 262.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 256.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 246.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 246.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 245.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 244.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 242.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 239.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 238.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 235.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 235.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 231.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 231.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 227.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 227.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 225.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 222.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 215.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 205.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 199.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 198.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 189.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 180.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 140.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1061.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1061.3
FF:10024-101D6 15,40,85 years, mixed 1061.3

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