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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:554.0 nTPM
HPA Brain:864.9 nTPM
GTEx:554.0 nTPM
FANTOM5:1204.0 Scaled Tags Per Million
Pig:1250.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

864.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 743.6
1981 Female, age 72, midline 906.0
2194 Female, age 79, both hemispheres 735.2
2565 Male, age 75, midline 713.5
2048 Male, age 55, midline 707.1
2816 Male, age 47, midline 656.4
Cervical spinal cord, dorsal horn
nTPM: 864.9
2296 Male, age 66, both hemispheres 1167.0
2173 Female, age 72, unknown 1054.3
2069 Male, age 47, both hemispheres 895.3
2297 Male, age 75, both hemispheres 733.9
1877 Male, age 55, unknown 669.9
2721 Male, age 90, both hemispheres 669.2
Cervical spinal cord, ventral horn
nTPM: 753.7
2098 Female, age 72, unknown 894.9
2480 Male, age 75, both hemispheres 818.6
2068 Male, age 55, unknown 763.2
2809 Male, age 90, both hemispheres 757.0
2295 Male, age 66, both hemispheres 659.3
2820 Female, age 79, both hemispheres 629.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

554.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 554.0
Samples: 159

Max nTPM: 2220.5
Min nTPM: 188.1
Std nTPM: 228.7
Median nTPM: 517.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2220.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1348.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1158.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1070.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1062.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1030.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 966.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 932.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 920.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 907.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 894.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 883.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 869.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 842.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 817.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 786.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 779.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 772.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 749.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 730.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 718.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 715.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 713.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 710.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 707.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 698.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 692.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 691.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 688.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 687.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 671.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 661.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 661.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 661.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 631.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 630.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 628.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 628.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 628.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 625.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 620.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 613.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 611.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 611.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 610.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 605.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 603.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 599.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 593.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 589.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 589.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 584.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 584.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 578.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 576.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 575.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 571.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 570.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 567.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 566.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 565.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 560.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 559.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 559.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 556.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 555.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 551.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 550.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 543.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 541.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 539.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 534.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 533.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 531.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 528.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 526.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 523.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 522.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 518.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 517.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 513.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 513.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 512.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 511.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 505.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 502.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 501.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 496.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 493.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 490.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 490.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 489.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 489.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 488.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 488.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 485.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 481.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 480.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 479.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 478.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 477.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 476.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 475.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 472.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 466.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 465.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 465.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 460.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 457.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 453.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 450.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 448.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 448.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 442.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 432.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 428.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 422.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 420.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 418.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 415.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 412.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 412.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 410.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 409.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 409.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 406.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 404.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 398.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 398.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 398.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 384.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 384.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 382.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 380.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 378.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 375.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 373.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 358.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 350.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 348.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 345.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 339.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 339.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 337.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 334.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 325.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 323.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 321.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 317.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 304.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 301.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 289.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 285.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 267.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 253.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 242.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 233.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 228.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 188.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1204.0
FF:10159-103A6 76 years, female 1303.2
FF:10181-103D1 60 years, female 1104.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1250.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 945.6
Samples: 4

Max nTPM: 1006.2
Min nTPM: 883.9
Sample A Female 991.5
Sample B Female 900.7
Sample C Male 883.9
Sample D Male 1006.2
Ventral spinal cord
nTPM: 1250.4
Samples: 4

Max nTPM: 1406.3
Min nTPM: 1176.0
Sample A Female 1225.4
Sample B Female 1406.3
Sample C Male 1176.0
Sample D Male 1194.0

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