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  • EIF4G2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:171.9 nTPM
HPA Brain:254.5 nTPM
GTEx:171.9 nTPM
FANTOM5:998.1 Scaled Tags Per Million
Pig:266.8 nTPM
Mouse:273.3 nTPM
Allen mouse:10.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.5
Sample id Sample description nTPM
Amygdala
nTPM: 254.5
2814 Male, age 76, right hemisphere 291.0
2695 Female, age 67, right hemisphere 287.9
2514 Male, age 75, right hemisphere 260.6
1987 Female, age 91, left hemisphere 227.1
2517 Female, age 94, left hemisphere 206.1
Basal amygdala
nTPM: 206.5
2609 Male, age 75, right hemisphere 258.5
2685 Female, age 94, left hemisphere 211.9
1955 Male, age 76, both hemispheres 210.5
2110 Male, age 80, left hemisphere 194.8
2827 Female, age 67, right hemisphere 181.8
2243 Female, age 91, right hemisphere 181.6
Central amygdala
nTPM: 235.1
2515 Male, age 75, right hemisphere 292.8
1905 Male, age 76, both hemispheres 264.6
2826 Female, age 94, left hemisphere 228.0
2239 Male, age 80, left hemisphere 196.4
2701 Female, age 91, right hemisphere 193.7
Corticomedial amygdala
nTPM: 194.1
2428 Male, age 75, right hemisphere 241.3
2829 Male, age 80, left hemisphere 205.9
2240 Male, age 76, both hemispheres 205.2
2242 Female, age 91, right hemisphere 178.1
2429 Female, age 94, left hemisphere 172.5
2535 Female, age 67, right hemisphere 161.7
Lateral amygdala
nTPM: 221.5
2516 Male, age 75, right hemisphere 263.5
1883 Male, age 76, both hemispheres 256.7
2534 Female, age 94, left hemisphere 219.1
2255 Female, age 91, right hemisphere 201.2
2256 Male, age 80, left hemisphere 194.6
2830 Female, age 67, right hemisphere 193.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 171.9
Samples: 152

Max nTPM: 308.2
Min nTPM: 109.2
Std nTPM: 29.3
Median nTPM: 169.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 308.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 286.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 243.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 230.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 223.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 220.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 218.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 218.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 215.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 213.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 213.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 210.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 207.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 206.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 206.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 206.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 205.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 204.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 204.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 204.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 204.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 203.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 203.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 203.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 200.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 200.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 199.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 199.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 197.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 196.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 195.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 195.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 193.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 191.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 191.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 189.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 188.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 187.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 187.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 187.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 186.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 186.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 184.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 183.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 182.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 182.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 181.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 180.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 180.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 179.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 178.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 178.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 178.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 177.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 177.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 176.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 175.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 175.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 175.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 174.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 174.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 174.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 174.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 173.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 173.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 172.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 172.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 172.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 171.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 170.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 170.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 170.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 170.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 168.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 167.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 165.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 165.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 165.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 164.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 162.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 162.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 162.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 162.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 162.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 162.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 161.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 161.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 160.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 159.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 158.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 157.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 156.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 156.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 156.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 156.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 155.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 154.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 153.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 153.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 152.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 151.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 151.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 151.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 151.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 151.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 150.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 150.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 150.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 150.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 150.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 149.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 147.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 146.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 144.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 142.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 141.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 141.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 141.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 140.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 133.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 133.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 132.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 131.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 130.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 129.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 123.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 114.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 109.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

998.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 998.1
FF:10151-102I7 76 years, female 998.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.8
Pig sample Sample description nTPM
Amygdala
nTPM: 266.8
Samples: 4

Max nTPM: 332.4
Min nTPM: 230.2
Sample A Female 332.4
Sample B Female 265.6
Sample C Male 239.0
Sample D Male 230.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 273.3
Samples: 4

Max nTPM: 279.0
Min nTPM: 268.1
Sample A Male 273.0
Sample B Male 268.1
Sample C Female 272.9
Sample D Female 279.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.3
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 20.6
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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