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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:337.3 nTPM
HPA Brain:754.4 nTPM
GTEx:337.3 nTPM
FANTOM5:1097.9 Scaled Tags Per Million
Pig:852.3 nTPM
Mouse:488.7 nTPM
Allen mouse:14.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

754.4
Sample id Sample description nTPM
Amygdala
nTPM: 753.4
2514 Male, age 75, right hemisphere 1437.9
2517 Female, age 94, left hemisphere 836.7
1987 Female, age 91, left hemisphere 668.2
2695 Female, age 67, right hemisphere 415.4
2814 Male, age 76, right hemisphere 408.9
Basal amygdala
nTPM: 754.4
2609 Male, age 75, right hemisphere 1247.5
2243 Female, age 91, right hemisphere 865.0
2110 Male, age 80, left hemisphere 832.0
2685 Female, age 94, left hemisphere 667.3
1955 Male, age 76, both hemispheres 515.8
2827 Female, age 67, right hemisphere 398.7
Central amygdala
nTPM: 624.1
2826 Female, age 94, left hemisphere 770.8
2239 Male, age 80, left hemisphere 761.1
2515 Male, age 75, right hemisphere 634.2
2701 Female, age 91, right hemisphere 495.1
1905 Male, age 76, both hemispheres 459.4
Corticomedial amygdala
nTPM: 744.0
2428 Male, age 75, right hemisphere 1078.2
2829 Male, age 80, left hemisphere 915.6
2242 Female, age 91, right hemisphere 757.0
2429 Female, age 94, left hemisphere 728.8
2535 Female, age 67, right hemisphere 510.9
2240 Male, age 76, both hemispheres 473.5
Lateral amygdala
nTPM: 684.0
2516 Male, age 75, right hemisphere 1061.2
2534 Female, age 94, left hemisphere 757.5
2255 Female, age 91, right hemisphere 716.5
2256 Male, age 80, left hemisphere 706.7
1883 Male, age 76, both hemispheres 537.8
2830 Female, age 67, right hemisphere 324.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

337.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 337.3
Samples: 152

Max nTPM: 925.6
Min nTPM: 1.9
Std nTPM: 198.8
Median nTPM: 317.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 925.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 911.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 894.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 840.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 704.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 703.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 689.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 683.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 677.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 672.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 666.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 665.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 659.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 638.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 622.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 609.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 601.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 591.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 576.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 576.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 572.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 563.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 556.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 546.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 538.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 518.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 509.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 506.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 503.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 498.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 497.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 495.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 492.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 488.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 472.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 464.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 461.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 455.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 452.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 446.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 445.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 444.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 440.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 440.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 438.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 432.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 429.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 420.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 420.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 414.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 412.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 410.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 410.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 400.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 396.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 393.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 387.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 387.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 386.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 383.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 381.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 374.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 373.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 370.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 368.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 367.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 367.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 363.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 352.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 351.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 349.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 349.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 345.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 341.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 335.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 325.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 309.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 309.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 302.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 290.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 289.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 287.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 286.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 282.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 279.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 274.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 271.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 270.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 268.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 265.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 265.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 260.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 245.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 235.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 230.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 230.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 230.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 221.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 217.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 217.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 216.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 210.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 209.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 207.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 203.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 202.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 195.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 191.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 183.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 182.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 180.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 176.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 176.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 173.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 171.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 169.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 167.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 160.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 159.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 142.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 127.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 115.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 111.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 111.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 104.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 101.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 82.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 76.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 60.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 55.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 45.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 43.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 32.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 30.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 26.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1097.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1097.9
FF:10151-102I7 76 years, female 1097.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

852.3
Pig sample Sample description nTPM
Amygdala
nTPM: 852.4
Samples: 4

Max nTPM: 905.5
Min nTPM: 724.1
Sample A Female 724.1
Sample B Female 905.5
Sample C Male 879.7
Sample D Male 900.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 488.7
Samples: 4

Max nTPM: 573.4
Min nTPM: 425.0
Sample A Male 425.0
Sample B Male 453.4
Sample C Female 573.4
Sample D Female 502.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.7
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 16.5
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 12.8

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