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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:677.0 nTPM
FANTOM5:356.8 Scaled Tags Per Million
Pig:402.5 nTPM
Mouse:326.5 nTPM
Allen mouse:12.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

677.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 350.5
2497 Male, age 66, unknown 494.2
2032 Female, age 42, unknown 350.6
2396 Male, age 61, right hemisphere 206.7
Centromedial thalamic nucleus
nTPM: 471.1
2401 Male, age 76, right hemisphere 532.8
2279 Female, age 85, left hemisphere 409.5
Habenula
nTPM: 487.7
2276 Male, age 66, unknown 546.1
1957 Male, age 80, both hemispheres 523.1
2203 Male, age 61, left hemisphere 497.2
2252 Male, age 62, unknown 384.4
Lateral geniculate body
nTPM: 583.4
2857 Male, age 74, right hemisphere 907.0
2399 Male, age 61, left hemisphere 664.4
2575 Female, age 94, right hemisphere 660.1
2659 Male, age 66, unknown 555.8
2035 Female, age 72, unknown 548.6
1953 Male, age 62, unknown 504.8
2106 Female, age 67, right hemisphere 436.4
2841 Male, age 80, both hemispheres 390.4
Lateral thalamic nuclei
nTPM: 528.0
2573 Female, age 94, left hemisphere 727.0
2661 Female, age 72, unknown 683.3
2577 Male, age 74, both hemispheres 547.9
1903 Male, age 76, left hemisphere 394.8
2765 Female, age 67, both hemispheres 287.1
Medial dorsal thalamic nucleus
nTPM: 544.6
2572 Female, age 94, right hemisphere 874.3
1810 Male, age 48, unknown 625.8
2498 Male, age 66, unknown 612.0
2576 Male, age 74, both hemispheres 610.7
2492 Male, age 75, right hemisphere 598.0
2026 Male, age 62, unknown 577.4
2283 Male, age 80, right hemisphere 535.4
1971 Male, age 61, right hemisphere 525.5
1859 Male, age 76, both hemispheres 517.8
2660 Female, age 72, unknown 443.7
2402 Female, age 67, both hemispheres 433.7
1930 Female, age 42, unknown 364.2
2039 Female, age 72, unknown 361.0
Medial geniculate body
nTPM: 619.7
2657 Male, age 74, right hemisphere 832.3
2650 Female, age 94, left hemisphere 829.2
2571 Male, age 75, right hemisphere 740.5
2217 Female, age 72, unknown 554.9
1811 Female, age 42, unknown 499.2
2207 Male, age 80, right hemisphere 448.0
2049 Male, age 76, both hemispheres 433.7
Nucleus reuniens
nTPM: 288.4
2205 Male, age 80, left hemisphere 507.7
2212 Female, age 67, left hemisphere 251.8
2210 Female, age 85, left hemisphere 105.7
Nucleus rhomboideus
nTPM: 268.3
2206 Male, age 80, both hemispheres 537.5
2213 Female, age 67, left hemisphere 153.7
2280 Female, age 85, left hemisphere 113.8
Posterior thalamic nucleus
nTPM: 677.0
2649 Female, age 94, both hemispheres 976.5
2655 Male, age 74, right hemisphere 907.3
2495 Female, age 67, right hemisphere 447.7
2266 Male, age 76, right hemisphere 376.5
Pulvinar
nTPM: 582.9
2724 Male, age 74, right hemisphere 844.7
1932 Male, age 80, right hemisphere 678.7
2499 Male, age 66, unknown 665.6
1972 Male, age 62, unknown 648.5
2398 Male, age 61, left hemisphere 619.1
1899 Female, age 42, unknown 573.6
2582 Female, age 72, unknown 544.5
1929 Male, age 48, unknown 479.3
2496 Female, age 67, right hemisphere 396.8
2214 Male, age 76, right hemisphere 378.2
Subthalamic nucleus
nTPM: 312.6
2282 Male, age 61, both hemispheres 465.7
2406 Female, age 72, unknown 396.3
2124 Male, age 62, unknown 318.4
2779 Female, age 42, unknown 303.6
2216 Male, age 48, unknown 299.1
2056 Female, age 72, unknown 288.4
2275 Male, age 66, unknown 231.4
2658 Male, age 74, both hemispheres 198.1
Ventral posterolateral thalamic nucleus
nTPM: 558.5
2197 Male, age 80, both hemispheres 663.6
2570 Male, age 75, right hemisphere 605.3
2740 Male, age 76, right hemisphere 589.8
2581 Female, age 72, unknown 570.7
2578 Male, age 74, both hemispheres 463.8
2397 Male, age 61, right hemisphere 457.7
Ventral posteromedial thalamic nucleus
nTPM: 543.9
2758 Male, age 80, both hemispheres 675.9
2653 Male, age 74, both hemispheres 571.6
2127 Male, age 76, right hemisphere 530.8
2281 Male, age 75, right hemisphere 494.2
2202 Male, age 61, left hemisphere 447.2
Ventral thalamic nuclei
nTPM: 484.2
2858 Female, age 72, unknown 755.6
2204 Male, age 80, both hemispheres 554.1
2580 Male, age 66, unknown 519.5
1845 Male, age 48, unknown 478.9
1860 Male, age 76, both hemispheres 470.0
2285 Male, age 62, unknown 451.7
1912 Female, age 42, unknown 400.3
2652 Male, age 74, left hemisphere 397.1
2291 Female, age 72, unknown 330.9
Zona incerta
nTPM: 305.6
2208 Male, age 80, right hemisphere 569.6
2403 Male, age 62, unknown 373.8
2663 Female, age 72, unknown 300.0
2822 Male, age 74, right hemisphere 145.5
2215 Male, age 66, unknown 139.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 356.8
FF:10154-103A1 76 years, female 356.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

402.5
Pig sample Sample description nTPM
Thalamus
nTPM: 402.5
Samples: 4

Max nTPM: 589.9
Min nTPM: 259.7
Sample A Female 413.3
Sample B Female 347.0
Sample C Male 589.9
Sample D Male 259.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 326.5
Samples: 4

Max nTPM: 345.3
Min nTPM: 282.5
Sample A Male 282.5
Sample B Male 336.3
Sample C Female 345.3
Sample D Female 341.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 12.6
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 13.9
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 11.3

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