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TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:450.6 nTPM
HPA Brain:1141.2 nTPM
GTEx:450.6 nTPM
FANTOM5:1221.5 Scaled Tags Per Million
Pig:767.5 nTPM
Mouse:597.4 nTPM
Allen mouse:11.3 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009172Antibody HPA067499Antibody CAB002574
Glial cells MediumMediumMedium
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1141.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1141.2
1857 Female, age 85, left hemisphere 1586.5
2481 Female, age 94, left hemisphere 1459.8
2290 Female, age 72, unknown 1354.3
1854 Male, age 80, left hemisphere 1212.6
2288 Male, age 75, left hemisphere 1077.9
2289 Male, age 61, right hemisphere 1046.6
2846 Female, age 79, unknown 799.9
1781 Male, age 74, unknown 592.3
Globus pallidus, externus
nTPM: 518.8
2646 Male, age 61, right hemisphere 866.5
1996 Male, age 80, right hemisphere 631.9
2772 Female, age 79, unknown 409.7
2567 Female, age 72, unknown 390.0
2395 Male, age 75, both hemispheres 296.1
Globus pallidus, internus
nTPM: 387.0
2483 Female, age 94, right hemisphere 826.7
2037 Male, age 80, right hemisphere 509.1
1818 Male, age 74, unknown 473.1
2287 Male, age 75, right hemisphere 341.4
2111 Female, age 85, right hemisphere 191.1
2566 Female, age 72, unknown 188.4
2778 Female, age 91, both hemispheres 179.4
Nucleus accumbens
nTPM: 897.4
2286 Male, age 75, left hemisphere 1463.7
1806 Female, age 85, left hemisphere 1335.1
2824 Male, age 61, right hemisphere 973.8
1783 Male, age 74, unknown 870.3
1856 Female, age 91, right hemisphere 766.8
2391 Female, age 94, left hemisphere 657.3
2698 Female, age 72, unknown 651.7
2732 Male, age 80, right hemisphere 461.0
Nucleus basalis of Meynert
nTPM: 766.4
2569 Male, age 61, both hemispheres 1002.8
2393 Male, age 80, right hemisphere 849.3
2484 Female, age 94, left hemisphere 818.2
2821 Male, age 75, both hemispheres 395.5
Nucleus of the diagonal band
nTPM: 638.2
2195 Female, age 85, both hemispheres 806.3
2775 Male, age 80, right hemisphere 699.9
1979 Male, age 74, unknown 679.1
1812 Female, age 91, both hemispheres 509.6
2029 Male, age 61, right hemisphere 496.3
Putamen
nTPM: 904.1
2482 Female, age 94, left hemisphere 1064.1
2489 Female, age 72, unknown 1041.8
2466 Female, age 79, unknown 888.2
1838 Male, age 80, right hemisphere 864.5
2647 Male, age 75, left hemisphere 845.2
1937 Female, age 91, right hemisphere 823.1
1829 Male, age 74, unknown 802.0
Septal nuclei
nTPM: 648.7
2059 Female, age 85, both hemispheres 1190.6
1960 Male, age 74, unknown 784.6
2031 Female, age 72, unknown 753.6
2199 Male, age 80, right hemisphere 567.2
2009 Female, age 91, both hemispheres 476.1
2394 Male, age 61, left hemisphere 436.3
2629 Female, age 94, right hemisphere 332.3
Stria terminalis, bed nucleus
nTPM: 412.0
2486 Female, age 94, both hemispheres 454.3
1974 Female, age 91, both hemispheres 415.1
2201 Male, age 74, unknown 366.4

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

450.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 450.6
Samples: 246

Max nTPM: 1114.7
Min nTPM: 13.6
Std nTPM: 199.9
Median nTPM: 430.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1114.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 997.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 960.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 941.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 913.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 903.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 886.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 846.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 845.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 834.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 822.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 818.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 816.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 812.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 807.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 805.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 804.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 803.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 803.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 787.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 758.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 735.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 734.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 729.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 729.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 710.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 707.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 702.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 701.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 690.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 685.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 684.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 682.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 675.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 674.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 672.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 661.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 658.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 653.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 651.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 646.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 637.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 630.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 628.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 619.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 617.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 617.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 615.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 605.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 605.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 603.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 601.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 600.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 598.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 597.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 593.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 590.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 588.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 585.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 583.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 583.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 579.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 573.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 569.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 566.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 563.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 560.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 559.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 558.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 558.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 556.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 548.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 544.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 543.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 537.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 537.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 532.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 525.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 524.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 517.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 515.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 512.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 509.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 506.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 503.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 502.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 501.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 498.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 498.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 495.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 494.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 494.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 488.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 488.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 481.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 480.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 476.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 474.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 474.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 473.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 472.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 472.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 469.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 468.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 466.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 464.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 461.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 458.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 456.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 455.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 454.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 450.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 445.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 445.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 444.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 444.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 439.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 439.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 439.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 436.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 432.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 431.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 431.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 429.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 425.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 425.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 424.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 423.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 422.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 421.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 420.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 420.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 416.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 416.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 416.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 415.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 414.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 413.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 411.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 407.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 407.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 401.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 400.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 398.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 395.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 388.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 386.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 384.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 382.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 380.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 378.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 378.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 374.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 366.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 363.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 360.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 358.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 357.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 355.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 349.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 347.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 346.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 343.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 341.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 341.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 340.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 337.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 334.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 333.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 333.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 332.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 330.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 329.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 328.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 328.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 328.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 327.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 327.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 327.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 326.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 325.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 325.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 319.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 319.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 318.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 318.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 318.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 318.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 313.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 308.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 305.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 305.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 300.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 298.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 297.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 292.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 292.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 283.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 279.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 279.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 275.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 274.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 273.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 272.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 272.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 272.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 267.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 267.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 267.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 266.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 263.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 261.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 256.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 246.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 243.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 238.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 236.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 234.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 227.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 224.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 223.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 220.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 218.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 209.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 201.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 197.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 191.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 185.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 179.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 165.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 156.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 154.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 150.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 135.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 86.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 75.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 54.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 47.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 41.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 36.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 13.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 356.9
Samples: 246

Max nTPM: 1259.6
Min nTPM: 22.7
Std nTPM: 192.7
Median nTPM: 326.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 1259.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 973.2
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 836.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 816.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 808.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 804.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 797.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 790.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 761.0
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 723.9
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 722.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 713.5
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 712.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 696.5
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 689.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 685.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 679.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 676.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 662.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 651.8
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 650.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 650.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 650.9
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 649.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 642.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 630.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 624.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 619.0
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 601.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 595.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 590.4
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 576.3
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 575.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 574.6
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 564.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 560.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 556.1
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 542.5
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 540.8
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 540.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 535.5
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 534.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 530.8
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 530.6
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 527.3
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 520.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 519.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 511.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 510.0
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 508.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 497.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 494.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 477.2
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 473.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 473.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 472.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 471.3
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 468.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 466.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 456.8
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 456.4
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 454.3
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 444.9
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 443.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 441.5
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 436.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 435.9
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 435.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 430.5
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 429.8
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 428.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 427.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 427.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 426.9
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 422.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 422.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 420.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 416.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 412.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 411.6
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 410.5
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 410.4
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 409.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 408.9
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 408.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 407.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 403.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 400.9
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 394.0
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 393.9
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 393.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 393.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 392.5
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 391.6
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 391.5
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 386.5
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 386.2
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 384.2
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 383.8
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 378.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 378.1
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 376.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 374.4
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 372.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 371.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 371.4
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 370.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 363.0
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 358.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 358.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 355.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 353.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 350.6
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 340.8
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 337.1
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 336.0
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 334.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 334.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 333.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 333.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 330.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 330.6
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 327.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 326.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 325.6
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 324.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 324.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 324.1
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 323.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 322.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 322.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 320.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 318.5
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 318.0
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 315.8
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 313.3
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 312.9
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 310.0
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 309.2
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 308.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 307.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 306.9
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 300.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 300.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 297.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 295.0
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 294.7
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 294.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 293.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 290.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 290.5
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 290.0
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 288.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 287.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 282.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 280.5
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 278.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 276.6
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 271.7
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 266.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 265.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 264.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 264.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 259.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 258.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 257.5
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 256.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 256.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 255.0
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 254.0
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 254.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 252.0
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 247.9
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 247.9
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 247.3
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 245.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 243.5
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 242.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 238.5
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 232.8
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 230.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 229.6
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 224.2
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 216.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 215.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 214.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 213.3
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 211.1
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 209.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 205.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 204.0
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 200.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 199.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 199.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 196.8
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 196.4
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 194.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 191.6
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 189.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 188.5
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 185.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 181.9
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 181.3
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 180.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 176.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 176.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 175.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 174.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 171.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 171.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 169.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 165.6
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 157.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 156.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 146.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 146.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 145.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 145.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 140.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 135.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 134.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 126.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 124.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 124.5
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 123.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 114.5
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 109.5
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 109.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 107.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 102.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 100.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 90.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 87.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 80.1
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 68.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 65.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 60.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 55.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 50.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 49.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 45.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 41.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 39.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 33.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 24.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 22.7
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Brain - Putamen (basal ganglia)
Average nTPM: 449.5
Samples: 205

Max nTPM: 1377.6
Min nTPM: 28.8
Std nTPM: 227.9
Median nTPM: 467.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1377.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1021.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 977.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 972.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 951.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 950.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 923.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 914.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 913.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 891.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 828.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 806.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 804.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 800.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 794.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 787.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 779.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 742.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 723.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 722.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 717.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 713.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 713.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 710.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 710.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 699.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 698.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 693.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 689.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 685.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 671.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 669.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 668.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 665.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 663.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 658.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 657.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 653.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 651.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 645.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 641.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 638.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 636.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 632.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 619.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 618.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 616.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 612.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 600.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 596.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 591.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 590.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 586.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 585.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 578.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 573.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 567.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 565.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 560.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 560.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 552.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 546.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 546.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 543.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 539.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 538.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 537.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 536.0
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 534.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 532.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 530.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 530.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 527.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 526.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 526.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 507.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 507.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 504.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 503.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 500.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 499.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 499.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 498.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 497.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 497.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 496.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 495.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 494.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 494.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 493.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 493.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 489.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 488.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 483.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 481.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 481.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 476.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 473.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 471.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 468.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 468.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 468.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 467.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 463.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 457.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 451.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 442.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 439.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 438.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 438.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 436.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 430.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 425.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 424.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 423.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 406.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 406.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 404.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 402.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 400.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 393.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 384.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 382.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 377.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 372.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 364.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 364.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 360.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 359.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 356.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 351.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 346.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 345.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 332.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 332.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 328.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 327.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 325.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 321.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 318.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 317.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 311.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 310.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 307.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 295.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 289.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 288.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 287.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 285.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 274.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 271.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 270.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 265.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 264.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 264.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 260.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 258.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 254.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 252.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 251.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 251.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 249.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 247.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 239.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 237.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 236.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 234.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 217.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 210.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 204.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 203.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 199.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 196.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 196.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 192.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 191.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 187.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 185.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 179.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 173.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 171.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 169.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 167.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 167.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 166.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 164.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 160.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 159.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 159.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 150.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 149.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 141.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 135.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 130.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 98.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 95.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 90.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 88.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 68.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 66.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 64.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 59.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 51.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 47.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 28.8
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1221.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1026.9
FF:10164-103B2 76 years, female 1026.9
Nucleus accumbens
Scaled Tags Per Million: 1005.7
FF:10037-101F1 23-56 years, mixed 1005.7
Putamen
Scaled Tags Per Million: 1221.5
FF:10176-103C5 60 years, female 1221.5
Globus pallidus
Scaled Tags Per Million: 531.1
FF:10175-103C4 60 years, female 749.4
FF:10161-103A8 76 years, female 312.7

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.5
Pig sample Sample description nTPM
Caudate
nTPM: 752.4
Samples: 4

Max nTPM: 897.5
Min nTPM: 568.9
Sample A Female 568.9
Sample B Female 810.3
Sample C Male 897.5
Sample D Male 732.8
Putamen
nTPM: 767.5
Samples: 4

Max nTPM: 1243.5
Min nTPM: 402.5
Sample A Female 402.5
Sample B Female 736.2
Sample C Male 1243.5
Sample D Male 687.8
Septum
nTPM: 550.6
Samples: 4

Max nTPM: 736.7
Min nTPM: 303.4
Sample A Female 563.5
Sample B Female 736.7
Sample C Male 303.4
Sample D Male 598.9
Ventral pallidum
nTPM: 684.8
Samples: 4

Max nTPM: 849.5
Min nTPM: 529.3
Sample A Female 849.5
Sample B Female 716.2
Sample C Male 529.3
Sample D Male 644.0

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

597.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 597.4
Samples: 4

Max nTPM: 711.2
Min nTPM: 526.9
Sample A Male 526.9
Sample B Male 544.6
Sample C Female 607.0
Sample D Female 711.2
Septum
nTPM: 473.8
Samples: 4

Max nTPM: 572.9
Min nTPM: 365.0
Sample A Male 365.0
Sample B Male 572.9
Sample C Female 453.8
Sample D Female 503.3
Ventral forebrain
nTPM: 478.8
Samples: 4

Max nTPM: 511.1
Min nTPM: 451.8
Sample A Male 465.9
Sample B Male 451.8
Sample C Female 511.1
Sample D Female 486.5

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.3
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 12.3
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 10.3
Pallidum
Expression energy: 7.7
69873839 Antisense, RP_050512_02_B03, Mouse strain C57BL/6J (56 days, male) 7.9
73521823 Antisense, RP_051101_03_B07, Mouse strain C57BL/6J (56 days, male) 7.6

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