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SLC1A2
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  • SLC1A2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:450.6 nTPM
FANTOM5:1026.9 Scaled Tags Per Million
Pig:752.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009172Antibody HPA067499Antibody CAB002574
Glial cells MediumMediumMedium
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

450.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 450.6
Samples: 246

Max nTPM: 1114.7
Min nTPM: 13.6
Std nTPM: 199.9
Median nTPM: 430.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1114.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 997.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 960.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 941.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 913.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 903.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 886.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 846.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 845.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 834.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 822.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 818.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 816.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 812.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 807.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 805.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 804.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 803.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 803.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 787.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 758.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 735.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 734.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 729.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 729.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 710.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 707.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 702.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 701.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 690.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 685.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 684.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 682.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 675.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 674.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 672.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 661.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 658.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 653.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 651.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 646.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 637.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 630.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 628.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 619.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 617.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 617.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 615.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 605.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 605.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 603.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 601.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 600.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 598.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 597.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 593.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 590.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 588.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 585.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 583.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 583.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 579.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 573.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 569.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 566.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 563.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 560.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 559.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 558.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 558.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 556.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 548.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 544.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 543.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 537.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 537.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 532.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 525.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 524.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 517.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 515.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 512.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 509.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 506.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 503.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 502.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 501.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 498.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 498.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 495.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 494.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 494.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 488.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 488.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 481.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 480.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 476.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 474.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 474.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 473.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 472.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 472.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 469.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 468.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 466.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 464.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 461.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 458.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 456.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 455.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 454.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 450.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 445.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 445.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 444.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 444.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 439.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 439.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 439.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 436.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 432.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 431.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 431.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 429.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 425.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 425.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 424.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 423.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 422.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 421.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 420.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 420.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 416.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 416.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 416.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 415.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 414.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 413.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 411.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 407.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 407.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 401.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 400.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 398.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 395.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 388.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 386.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 384.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 382.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 380.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 378.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 378.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 374.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 366.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 363.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 360.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 358.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 357.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 355.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 349.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 347.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 346.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 343.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 341.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 341.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 340.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 337.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 334.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 333.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 333.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 332.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 330.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 329.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 328.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 328.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 328.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 327.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 327.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 327.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 326.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 325.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 325.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 319.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 319.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 318.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 318.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 318.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 318.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 313.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 308.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 305.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 305.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 300.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 298.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 297.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 292.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 292.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 283.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 279.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 279.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 275.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 274.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 273.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 272.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 272.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 272.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 267.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 267.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 267.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 266.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 263.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 261.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 256.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 246.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 243.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 238.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 236.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 234.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 227.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 224.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 223.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 220.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 218.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 209.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 201.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 197.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 191.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 185.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 179.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 165.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 156.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 154.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 150.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 135.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 86.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 75.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 54.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 47.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 41.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 36.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 13.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1026.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1026.9
FF:10164-103B2 76 years, female 1026.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

752.4
Pig sample Sample description nTPM
Caudate
nTPM: 752.4
Samples: 4

Max nTPM: 897.5
Min nTPM: 568.9
Sample A Female 568.9
Sample B Female 810.3
Sample C Male 897.5
Sample D Male 732.8

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