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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:886.6 nTPM
GTEx:185.0 nTPM
FANTOM5:1215.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009172Antibody HPA067499Antibody CAB002574
Glial cells LowMediumMedium
Neuronal cells Not detectedNot detectedNot detected






HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

886.6
Sample id Sample description nTPM
Hippocampus
nTPM: 886.6
2148 Female, age 91, left hemisphere 1013.2
1911 Female, age 85, right hemisphere 907.9
2529 Female, age 94, left hemisphere 901.2
2621 Female, age 67, right hemisphere 855.3
1855 Male, age 76, left hemisphere 837.3
1898 Male, age 80, left hemisphere 804.5

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 185.0
Samples: 197

Max nTPM: 680.7
Min nTPM: 15.9
Std nTPM: 129.2
Median nTPM: 157.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 680.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 624.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 589.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 569.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 533.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 514.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 485.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 474.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 469.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 462.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 435.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 418.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 414.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 410.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 402.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 389.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 386.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 374.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 373.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 330.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 329.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 326.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 306.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 302.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 301.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 301.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 296.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 294.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 293.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 292.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 292.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 292.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 288.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 287.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 286.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 285.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 285.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 281.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 279.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 279.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 276.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 275.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 274.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 274.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 274.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 270.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 270.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 267.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 264.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 258.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 256.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 252.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 251.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 249.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 247.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 245.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 244.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 243.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 237.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 236.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 236.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 235.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 233.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 230.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 230.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 226.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 222.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 222.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 222.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 218.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 214.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 213.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 213.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 208.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 208.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 205.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 204.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 201.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 201.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 201.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 198.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 198.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 198.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 193.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 191.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 187.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 183.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 177.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 172.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 172.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 171.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 170.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 166.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 166.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 165.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 160.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 159.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 158.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 157.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 157.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 155.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 152.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 149.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 147.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 147.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 147.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 147.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 146.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 146.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 145.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 143.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 143.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 142.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 139.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 137.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 136.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 132.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 131.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 130.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 129.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 127.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 127.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 125.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 125.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 121.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 119.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 118.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 114.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 112.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 111.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 111.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 111.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 110.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 108.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 106.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 105.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 103.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 95.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 91.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 91.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 91.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 90.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 89.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 85.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 81.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 80.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 79.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 79.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 77.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 76.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 75.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 75.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 72.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 72.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 72.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 72.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 71.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 69.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 68.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 66.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 66.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 66.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 65.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 63.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 63.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 62.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 59.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 59.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 58.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 57.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 57.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 55.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 51.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 49.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 48.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 46.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 45.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 44.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 42.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 40.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 37.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 37.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 32.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 29.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 27.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 27.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 27.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 26.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 22.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 22.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 21.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 19.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 19.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 19.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 15.9
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1215.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1215.3
FF:10169-103B7 60 years, female 1339.7
FF:10153-102I9 76 years, female 1090.8

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