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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:64.0 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:88.3 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.0
Sample id Sample description nTPM
Area postrema
nTPM: 27.2
2054 Male, age 76, both hemispheres 40.8
2799 Male, age 61, both hemispheres 29.6
2306 Male, age 80, both hemispheres 11.1
Dorsal medullary reticular nucleus
nTPM: 55.4
2040 Female, age 85, both hemispheres 82.1
2373 Male, age 61, both hemispheres 42.4
2088 Male, age 76, both hemispheres 41.8
Dorsal motor vagal complex
nTPM: 44.2
2133 Female, age 91, both hemispheres 73.8
2000 Male, age 74, unknown 56.5
2813 Female, age 72, unknown 51.4
2844 Male, age 55, unknown 49.1
2643 Male, age 74, both hemispheres 33.0
2797 Male, age 61, both hemispheres 31.9
2185 Male, age 76, both hemispheres 29.7
2807 Female, age 85, both hemispheres 28.6
Gigantocellular reticular nuclei, medullary
nTPM: 45.4
1876 Female, age 85, both hemispheres 67.4
2022 Male, age 76, right hemisphere 60.4
2462 Male, age 74, both hemispheres 52.7
2310 Male, age 80, both hemispheres 34.8
2387 Female, age 91, both hemispheres 29.5
2314 Male, age 61, both hemispheres 27.4
Gigantocellular reticular nuclei, pars
nTPM: 40.9
2084 Female, age 85, both hemispheres 65.0
2336 Male, age 61, both hemispheres 57.7
2168 Male, age 76, both hemispheres 38.2
2706 Male, age 80, both hemispheres 22.7
2330 Male, age 80, both hemispheres 20.8
Inferior olive
nTPM: 34.0
2085 Female, age 85, both hemispheres 49.1
2563 Male, age 74, both hemispheres 43.2
2628 Female, age 91, both hemispheres 28.3
2178 Male, age 61, both hemispheres 25.6
2379 Male, age 80, both hemispheres 23.8
Lateral medullary reticular nucleus
nTPM: 36.9
2044 Male, age 76, both hemispheres 52.3
2190 Female, age 85, both hemispheres 43.4
2804 Female, age 91, both hemispheres 41.8
2374 Male, age 61, both hemispheres 35.6
2305 Male, age 74, both hemispheres 25.9
2852 Male, age 80, both hemispheres 22.1
Medial olivary nucleus
nTPM: 21.1
2138 Female, age 91, both hemispheres 30.3
1962 Male, age 76, both hemispheres 23.0
2851 Male, age 80, both hemispheres 20.2
1943 Male, age 61, both hemispheres 11.0
Medial vestibular nucleus
nTPM: 58.7
2134 Male, age 76, both hemispheres 66.2
2803 Female, age 91, both hemispheres 64.9
2093 Male, age 80, both hemispheres 61.4
2624 Male, age 61, both hemispheres 58.5
2801 Male, age 74, both hemispheres 55.9
2743 Female, age 85, both hemispheres 45.3
Motor hypoglossal nucleus
nTPM: 56.1
2132 Female, age 85, both hemispheres 71.1
2461 Male, age 61, both hemispheres 68.8
2125 Female, age 91, both hemispheres 63.4
2277 Male, age 76, both hemispheres 42.4
2182 Male, age 80, both hemispheres 34.8
Nucleus ambiguus
nTPM: 46.3
2096 Female, age 85, both hemispheres 59.0
2071 Male, age 76, both hemispheres 33.6
Nucleus cuneatus
nTPM: 32.7
2562 Male, age 61, both hemispheres 49.2
2564 Male, age 74, both hemispheres 45.9
2131 Male, age 76, both hemispheres 40.0
2100 Male, age 76, both hemispheres 34.9
2805 Female, age 91, both hemispheres 34.2
2376 Male, age 61, both hemispheres 30.7
2381 Male, age 80, both hemispheres 27.9
2808 Female, age 85, both hemispheres 18.9
2380 Male, age 80, both hemispheres 12.9
Nucleus gracilis
nTPM: 21.8
2627 Male, age 74, both hemispheres 36.5
2299 Female, age 85, both hemispheres 16.1
2382 Male, age 80, both hemispheres 12.6
Nucleus raphe obscurus
nTPM: 32.6
2800 Male, age 61, midline 45.7
2845 Female, age 85, midline 37.7
2142 Male, age 76, midline 14.4
Nucleus raphe pallidus
nTPM: 29.2
2183 Male, age 80, midline 38.8
1924 Male, age 61, midline 28.3
2145 Male, age 76, midline 20.4
Nucleus tractus solitarii
nTPM: 54.1
2144 Female, age 91, right hemisphere 87.2
2656 Male, age 76, both hemispheres 57.2
2191 Female, age 85, both hemispheres 39.3
2307 Male, age 80, both hemispheres 32.8
Parvicellular reticular nuclei
nTPM: 41.3
2119 Male, age 80, both hemispheres 48.0
2095 Male, age 76, both hemispheres 38.7
2558 Male, age 74, both hemispheres 37.3
Parvicellular reticular nuclei, medullary
nTPM: 61.6
2189 Female, age 91, both hemispheres 65.6
2091 Female, age 85, both hemispheres 60.1
2181 Male, age 80, left hemisphere 59.0
Peritrigeminal nucleus
nTPM: 40.5
2179 Male, age 61, both hemispheres 42.0
2136 Male, age 76, both hemispheres 40.7
2067 Female, age 85, both hemispheres 38.7
Prepositus hypoglossal nucleus
nTPM: 53.0
2855 Female, age 85, right hemisphere 59.0
2086 Male, age 80, both hemispheres 46.9
Spinal trigeminal nucleus, caudal
nTPM: 47.0
2390 Female, age 91, both hemispheres 73.5
2447 Male, age 76, both hemispheres 47.4
2642 Male, age 74, both hemispheres 42.3
2308 Male, age 80, both hemispheres 36.8
2312 Male, age 61, both hemispheres 34.9
Spinal trigeminal nucleus, interpolar
nTPM: 64.0
2625 Male, age 61, both hemispheres 86.8
2386 Female, age 85, both hemispheres 67.7
2033 Male, age 80, both hemispheres 65.2
2066 Male, age 76, right hemisphere 55.2
2389 Female, age 91, both hemispheres 45.2
Spinal vestibular nucleus
nTPM: 56.6
2186 Female, age 91, both hemispheres 68.0
2780 Male, age 80, both hemispheres 66.3
2806 Female, age 85, both hemispheres 58.9
2796 Male, age 61, both hemispheres 56.7
2748 Male, age 76, both hemispheres 52.7
2384 Male, age 74, both hemispheres 37.0
Superior vestibular nucleus
nTPM: 52.4
2015 Male, age 80, both hemispheres 55.0
2383 Male, age 74, both hemispheres 55.0
2061 Male, age 76, both hemispheres 47.3
Ventral medullary reticular nucleus
nTPM: 45.8
2060 Male, age 76, both hemispheres 53.6
2372 Male, age 61, both hemispheres 38.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 39.8
2741 Female, age 85, both hemispheres 51.6
2180 Male, age 61, both hemispheres 45.2
1986 Male, age 76, both hemispheres 40.5
2302 Female, age 91, both hemispheres 36.6
2118 Male, age 80, both hemispheres 25.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 49.2
FF:10038-101F2 18-64 years, mixed 70.6
FF:10174-103C3 60 years, female 41.6
FF:10155-103A2 76 years, female 35.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 88.3
Samples: 4

Max nTPM: 104.3
Min nTPM: 71.4
Sample A Female 104.3
Sample B Female 102.5
Sample C Male 75.0
Sample D Male 71.4

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