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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.1 nTPM
HPA Brain:93.6 nTPM
GTEx:148.1 nTPM
FANTOM5:106.9 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:194.5 nTPM
Allen mouse:6.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
Sample id Sample description nTPM
Amygdala
nTPM: 93.6
2814 Male, age 76, right hemisphere 110.4
2695 Female, age 67, right hemisphere 99.1
1987 Female, age 91, left hemisphere 90.2
2517 Female, age 94, left hemisphere 85.4
2514 Male, age 75, right hemisphere 82.9
Basal amygdala
nTPM: 83.9
2110 Male, age 80, left hemisphere 91.0
2609 Male, age 75, right hemisphere 90.2
2685 Female, age 94, left hemisphere 87.2
1955 Male, age 76, both hemispheres 85.8
2243 Female, age 91, right hemisphere 84.6
2827 Female, age 67, right hemisphere 64.7
Central amygdala
nTPM: 92.0
1905 Male, age 76, both hemispheres 109.1
2826 Female, age 94, left hemisphere 98.0
2515 Male, age 75, right hemisphere 91.3
2239 Male, age 80, left hemisphere 89.6
2701 Female, age 91, right hemisphere 71.8
Corticomedial amygdala
nTPM: 82.6
2428 Male, age 75, right hemisphere 89.8
2242 Female, age 91, right hemisphere 89.1
2829 Male, age 80, left hemisphere 88.1
2429 Female, age 94, left hemisphere 83.0
2240 Male, age 76, both hemispheres 77.1
2535 Female, age 67, right hemisphere 68.7
Lateral amygdala
nTPM: 83.4
1883 Male, age 76, both hemispheres 100.6
2534 Female, age 94, left hemisphere 100.2
2516 Male, age 75, right hemisphere 91.1
2255 Female, age 91, right hemisphere 78.4
2256 Male, age 80, left hemisphere 69.6
2830 Female, age 67, right hemisphere 60.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.1
Samples: 152

Max nTPM: 427.7
Min nTPM: 68.1
Std nTPM: 50.6
Median nTPM: 141.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 427.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 372.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 352.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 316.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 235.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 231.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 225.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 223.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 221.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 220.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 215.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 211.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 211.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 199.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 190.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 190.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 189.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 188.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 183.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 183.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 179.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 178.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 178.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 178.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 178.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 176.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 175.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 173.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 171.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 170.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 168.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 166.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 166.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 164.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 163.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 163.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 161.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 160.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 160.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 159.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 158.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 157.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 157.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 156.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 152.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 151.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 151.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 151.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 151.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 149.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 147.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 146.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 145.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 145.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 145.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 144.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 142.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 141.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 141.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 138.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 138.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 138.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 136.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 136.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 136.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 136.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 134.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 133.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 131.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 131.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 130.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 130.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 129.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 128.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 126.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 122.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 120.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 118.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 118.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 117.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 115.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 115.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 114.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 113.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 112.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 112.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 109.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 109.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 109.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 106.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 105.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 99.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 99.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 95.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 91.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 84.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 84.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 69.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 106.9
FF:10151-102I7 76 years, female 106.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.5
Pig sample Sample description nTPM
Amygdala
nTPM: 73.5
Samples: 4

Max nTPM: 98.2
Min nTPM: 61.2
Sample A Female 98.2
Sample B Female 66.4
Sample C Male 68.1
Sample D Male 61.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.5
Samples: 4

Max nTPM: 201.5
Min nTPM: 187.4
Sample A Male 187.4
Sample B Male 201.5
Sample C Female 196.1
Sample D Female 193.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 7.2
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 6.4

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