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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:97.7 nTPM
HPA Brain:96.6 nTPM
GTEx:97.7 nTPM
FANTOM5:86.1 Scaled Tags Per Million
Pig:115.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 96.6
2565 Male, age 75, midline 115.7
2194 Female, age 79, both hemispheres 109.5
1981 Female, age 72, midline 108.2
2816 Male, age 47, midline 82.5
2048 Male, age 55, midline 67.2
Cervical spinal cord, dorsal horn
nTPM: 93.8
2069 Male, age 47, both hemispheres 105.6
2173 Female, age 72, unknown 104.3
2297 Male, age 75, both hemispheres 94.5
2721 Male, age 90, both hemispheres 89.4
2296 Male, age 66, both hemispheres 88.9
1877 Male, age 55, unknown 79.9
Cervical spinal cord, ventral horn
nTPM: 90.9
2480 Male, age 75, both hemispheres 100.0
2295 Male, age 66, both hemispheres 96.4
2809 Male, age 90, both hemispheres 94.7
2068 Male, age 55, unknown 89.3
2098 Female, age 72, unknown 87.8
2820 Female, age 79, both hemispheres 77.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 97.7
Samples: 159

Max nTPM: 181.1
Min nTPM: 51.1
Std nTPM: 24.3
Median nTPM: 94.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 181.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 174.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 165.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 153.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 151.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 145.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 144.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 143.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 143.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 142.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 141.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 138.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 137.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 134.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 130.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 126.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 126.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 123.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 120.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 120.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 118.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 117.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 114.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 114.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 114.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 114.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 113.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 113.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 112.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 111.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 110.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 110.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 110.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 109.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 108.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 107.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 107.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 107.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 105.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 104.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 103.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 103.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 103.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 103.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 102.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 101.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 100.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 100.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 99.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 98.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 98.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 98.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 98.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 97.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 97.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 97.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 96.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 96.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 96.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 96.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 96.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 95.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 95.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 94.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 94.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 94.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 93.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 92.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 92.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 91.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 91.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 91.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 90.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 90.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 90.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 89.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 89.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 88.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 88.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 87.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 87.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 87.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 87.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 86.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 86.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 86.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 85.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 85.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 85.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 82.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 82.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 82.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 82.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 80.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 80.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 80.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 80.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 80.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 79.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 79.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 79.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 78.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 78.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 78.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 78.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 78.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 77.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 77.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 77.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 75.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 73.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 73.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 73.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 70.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 69.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 69.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 67.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 67.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 66.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 64.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 64.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 63.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 60.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 58.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 54.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 86.1
FF:10181-103D1 60 years, female 100.1
FF:10159-103A6 76 years, female 72.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 95.1
Samples: 4

Max nTPM: 103.5
Min nTPM: 85.4
Sample A Female 98.1
Sample B Female 85.4
Sample C Male 103.5
Sample D Male 93.4
Ventral spinal cord
nTPM: 115.0
Samples: 4

Max nTPM: 126.7
Min nTPM: 104.4
Sample A Female 105.6
Sample B Female 123.3
Sample C Male 126.7
Sample D Male 104.4

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