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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:247.2 nTPM
HPA Brain:283.1 nTPM
GTEx:247.2 nTPM
FANTOM5:197.7 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:1165.3 nTPM
Allen mouse:33.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.1
Sample id Sample description nTPM
Amygdala
nTPM: 283.1
2814 Male, age 76, right hemisphere 389.0
2514 Male, age 75, right hemisphere 286.8
2695 Female, age 67, right hemisphere 256.3
1987 Female, age 91, left hemisphere 256.0
2517 Female, age 94, left hemisphere 227.3
Basal amygdala
nTPM: 204.1
1955 Male, age 76, both hemispheres 242.9
2609 Male, age 75, right hemisphere 238.2
2110 Male, age 80, left hemisphere 235.4
2243 Female, age 91, right hemisphere 206.0
2685 Female, age 94, left hemisphere 190.2
2827 Female, age 67, right hemisphere 112.1
Central amygdala
nTPM: 237.3
1905 Male, age 76, both hemispheres 377.1
2515 Male, age 75, right hemisphere 218.3
2826 Female, age 94, left hemisphere 216.6
2239 Male, age 80, left hemisphere 195.2
2701 Female, age 91, right hemisphere 179.1
Corticomedial amygdala
nTPM: 214.0
2428 Male, age 75, right hemisphere 254.3
2829 Male, age 80, left hemisphere 252.1
2240 Male, age 76, both hemispheres 227.6
2429 Female, age 94, left hemisphere 226.5
2242 Female, age 91, right hemisphere 205.4
2535 Female, age 67, right hemisphere 118.1
Lateral amygdala
nTPM: 211.2
1883 Male, age 76, both hemispheres 339.1
2516 Male, age 75, right hemisphere 263.2
2534 Female, age 94, left hemisphere 221.6
2255 Female, age 91, right hemisphere 162.4
2256 Male, age 80, left hemisphere 146.3
2830 Female, age 67, right hemisphere 134.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 247.2
Samples: 152

Max nTPM: 500.8
Min nTPM: 117.5
Std nTPM: 69.0
Median nTPM: 240.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 500.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 444.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 406.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 405.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 379.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 377.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 372.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 372.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 371.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 371.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 369.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 363.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 361.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 361.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 352.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 348.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 342.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 339.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 336.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 323.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 321.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 320.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 319.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 319.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 313.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 311.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 308.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 308.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 307.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 305.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 305.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 302.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 299.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 289.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 281.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 280.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 280.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 280.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 279.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 278.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 276.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 273.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 273.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 272.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 270.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 270.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 269.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 268.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 266.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 266.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 266.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 264.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 263.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 263.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 262.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 261.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 261.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 261.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 260.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 258.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 257.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 255.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 254.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 254.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 253.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 252.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 251.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 250.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 250.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 249.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 248.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 247.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 245.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 242.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 241.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 239.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 238.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 233.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 233.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 233.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 230.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 230.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 229.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 229.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 227.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 227.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 225.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 225.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 223.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 222.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 221.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 221.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 220.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 219.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 219.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 216.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 214.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 214.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 213.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 211.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 209.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 209.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 208.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 207.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 206.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 205.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 203.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 201.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 201.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 198.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 196.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 195.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 191.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 190.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 187.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 185.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 185.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 184.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 183.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 182.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 179.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 178.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 177.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 170.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 169.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 167.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 167.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 163.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 160.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 145.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 144.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 144.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 138.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 137.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 132.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 130.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 123.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.7
FF:10151-102I7 76 years, female 197.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1165.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 1165.3
Samples: 4

Max nTPM: 1207.0
Min nTPM: 1115.0
Sample A Male 1194.4
Sample B Male 1144.6
Sample C Female 1207.0
Sample D Female 1115.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

33.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 33.6
70528264 Antisense, RP_050623_02_C01, Mouse strain C57BL/6J (56 days, male) 33.6

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