MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:309.0 nTPM
HPA Brain:342.7 nTPM
GTEx:309.0 nTPM
FANTOM5:227.2 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:1424.0 nTPM
Allen mouse:25.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 342.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.3
2019 Male, age 18, unknown 359.7
2411 Female, age 72, unknown 295.9
2219 Male, age 76, both hemispheres 292.6
1827 Male, age 72, unknown 291.2
2828 Female, age 72, unknown 240.6
1870 Female, age 42, unknown 224.6
1833 Male, age 53, unknown 219.0
2666 Male, age 74, left hemisphere 203.0
1830 Male, age 51, unknown 188.5
2586 Male, age 75, left hemisphere 168.1
Dorsal raphe nucleus
nTPM: 290.6
2298 Female, age 72, unknown 401.5
1828 Male, age 53, unknown 309.1
2750 Male, age 76, both hemispheres 266.0
2047 Male, age 72, unknown 262.7
2016 Female, age 72, unknown 213.7
Inferior colliculus
nTPM: 280.0
2097 Female, age 72, unknown 389.4
1890 Male, age 53, unknown 285.2
1848 Female, age 42, unknown 248.3
2849 Male, age 72, unknown 197.0
Median raphe nucleus
nTPM: 254.7
2220 Male, age 76, midline 254.7
Periaquaductal grey, anterior
nTPM: 265.7
1947 Male, age 18, unknown 284.4
1795 Male, age 51, unknown 267.9
2502 Female, age 75, unknown 244.8
Periaquaductal grey, dorsal
nTPM: 214.4
2464 Female, age 72, unknown 219.8
1840 Male, age 53, unknown 216.3
2850 Male, age 76, both hemispheres 211.5
1831 Male, age 72, unknown 209.9
Periaquaductal grey, lateral
nTPM: 246.0
2272 Male, age 74, both hemispheres 337.3
2140 Male, age 76, both hemispheres 201.1
2053 Male, age 18, unknown 199.7
Pretectal area
nTPM: 332.2
2007 Male, age 72, unknown 445.0
1816 Male, age 51, unknown 441.9
1817 Female, age 42, unknown 434.9
1944 Female, age 72, unknown 414.4
2667 Female, age 75, unknown 363.8
2273 Male, age 74, both hemispheres 346.1
1815 Male, age 53, unknown 337.7
2224 Female, age 72, unknown 280.8
2316 Male, age 76, right hemisphere 236.5
2825 Male, age 18, unknown 204.8
2407 Male, age 75, both hemispheres 148.3
Red nucleus
nTPM: 270.5
1821 Female, age 72, unknown 387.0
2785 Male, age 18, unknown 319.7
2725 Female, age 75, unknown 317.7
2503 Female, age 72, unknown 297.3
2823 Male, age 76, right hemisphere 264.0
1954 Female, age 42, unknown 263.7
1904 Male, age 53, unknown 257.7
1865 Male, age 51, unknown 256.6
2769 Male, age 72, unknown 252.9
2227 Male, age 72, unknown 251.8
2588 Male, age 74, left hemisphere 216.3
2584 Male, age 75, left hemisphere 162.0
Substantia nigra
nTPM: 342.7
1916 Female, age 42, unknown 481.0
1851 Male, age 51, unknown 403.7
1889 Female, age 72, unknown 401.4
1941 Male, age 53, unknown 390.3
2241 Male, age 72, unknown 384.7
2665 Male, age 74, both hemispheres 329.3
2409 Female, age 72, unknown 325.6
2699 Male, age 18, unknown 267.1
2590 Female, age 75, unknown 253.6
2583 Male, age 75, right hemisphere 190.8
Superior colliculus
nTPM: 253.6
2087 Female, age 72, unknown 376.3
2261 Male, age 18, unknown 291.6
1796 Male, age 53, unknown 280.8
1895 Male, age 76, right hemisphere 279.4
2587 Male, age 74, left hemisphere 267.5
2668 Female, age 75, unknown 251.8
1913 Female, age 42, unknown 227.1
1839 Male, age 51, unknown 220.3
1995 Male, age 72, unknown 209.4
2664 Male, age 75, both hemispheres 131.5
Ventral tegmental area
nTPM: 299.7
2410 Female, age 72, unknown 418.1
1915 Female, age 42, unknown 362.4
2218 Male, age 76, both hemispheres 361.6
1942 Male, age 51, unknown 246.7
2223 Female, age 72, unknown 212.5
2021 Male, age 53, unknown 196.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 309.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 309.0
Samples: 139

Max nTPM: 834.4
Min nTPM: 125.9
Std nTPM: 133.4
Median nTPM: 270.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 834.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 826.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 758.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 674.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 612.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 611.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 608.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 532.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 511.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 498.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 496.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 227.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 227.2
FF:10158-103A5 76 years, female 227.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1424.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1424.0
Samples: 4

Max nTPM: 1445.5
Min nTPM: 1385.1
Sample A Male 1445.5
Sample B Male 1428.4
Sample C Female 1385.1
Sample D Female 1436.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 25.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.7
70528264 Antisense, RP_050623_02_C01, Mouse strain C57BL/6J (56 days, male) 25.7

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