We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CDK2AP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CDK2AP1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:261.5 nTPM
FANTOM5:226.6 Scaled Tags Per Million
Pig:76.4 nTPM
Allen mouse:4.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.5
Sample id Sample description nTPM
Area postrema
nTPM: 261.5
2799 Male, age 61, both hemispheres 396.3
2306 Male, age 80, both hemispheres 207.2
2054 Male, age 76, both hemispheres 181.2
Dorsal medullary reticular nucleus
nTPM: 160.0
2373 Male, age 61, both hemispheres 191.5
2040 Female, age 85, both hemispheres 147.0
2088 Male, age 76, both hemispheres 141.5
Dorsal motor vagal complex
nTPM: 179.8
2797 Male, age 61, both hemispheres 376.1
2185 Male, age 76, both hemispheres 185.1
2643 Male, age 74, both hemispheres 181.5
2000 Male, age 74, unknown 167.7
2813 Female, age 72, unknown 142.3
2133 Female, age 91, both hemispheres 136.7
2807 Female, age 85, both hemispheres 128.1
2844 Male, age 55, unknown 120.8
Gigantocellular reticular nuclei, medullary
nTPM: 145.4
2314 Male, age 61, both hemispheres 229.1
1876 Female, age 85, both hemispheres 144.9
2387 Female, age 91, both hemispheres 136.1
2022 Male, age 76, right hemisphere 133.1
2462 Male, age 74, both hemispheres 121.7
2310 Male, age 80, both hemispheres 107.8
Gigantocellular reticular nuclei, pars
nTPM: 120.4
2084 Female, age 85, both hemispheres 140.1
2336 Male, age 61, both hemispheres 134.2
2706 Male, age 80, both hemispheres 118.4
2330 Male, age 80, both hemispheres 117.1
2168 Male, age 76, both hemispheres 91.9
Inferior olive
nTPM: 246.1
2563 Male, age 74, both hemispheres 279.1
2379 Male, age 80, both hemispheres 254.1
2085 Female, age 85, both hemispheres 254.0
2178 Male, age 61, both hemispheres 251.6
2628 Female, age 91, both hemispheres 191.8
Lateral medullary reticular nucleus
nTPM: 194.3
2804 Female, age 91, both hemispheres 221.1
2374 Male, age 61, both hemispheres 210.7
2852 Male, age 80, both hemispheres 195.7
2190 Female, age 85, both hemispheres 189.5
2305 Male, age 74, both hemispheres 184.5
2044 Male, age 76, both hemispheres 164.4
Medial olivary nucleus
nTPM: 239.6
2138 Female, age 91, both hemispheres 271.2
1962 Male, age 76, both hemispheres 245.1
1943 Male, age 61, both hemispheres 240.8
2851 Male, age 80, both hemispheres 201.4
Medial vestibular nucleus
nTPM: 144.0
2624 Male, age 61, both hemispheres 160.6
2134 Male, age 76, both hemispheres 151.6
2743 Female, age 85, both hemispheres 141.8
2801 Male, age 74, both hemispheres 140.6
2093 Male, age 80, both hemispheres 139.6
2803 Female, age 91, both hemispheres 129.8
Motor hypoglossal nucleus
nTPM: 148.9
2461 Male, age 61, both hemispheres 187.8
2277 Male, age 76, both hemispheres 162.5
2125 Female, age 91, both hemispheres 145.1
2182 Male, age 80, both hemispheres 124.6
2132 Female, age 85, both hemispheres 124.4
Nucleus ambiguus
nTPM: 172.6
2071 Male, age 76, both hemispheres 256.2
2096 Female, age 85, both hemispheres 89.0
Nucleus cuneatus
nTPM: 176.3
2380 Male, age 80, both hemispheres 212.3
2564 Male, age 74, both hemispheres 203.4
2562 Male, age 61, both hemispheres 197.1
2376 Male, age 61, both hemispheres 181.3
2100 Male, age 76, both hemispheres 169.4
2808 Female, age 85, both hemispheres 167.2
2805 Female, age 91, both hemispheres 159.9
2131 Male, age 76, both hemispheres 151.1
2381 Male, age 80, both hemispheres 145.3
Nucleus gracilis
nTPM: 173.6
2627 Male, age 74, both hemispheres 212.5
2382 Male, age 80, both hemispheres 155.7
2299 Female, age 85, both hemispheres 152.6
Nucleus raphe obscurus
nTPM: 198.5
2142 Male, age 76, midline 252.8
2845 Female, age 85, midline 177.4
2800 Male, age 61, midline 165.1
Nucleus raphe pallidus
nTPM: 196.7
1924 Male, age 61, midline 229.1
2145 Male, age 76, midline 223.2
2183 Male, age 80, midline 137.7
Nucleus tractus solitarii
nTPM: 155.0
2144 Female, age 91, right hemisphere 220.3
2191 Female, age 85, both hemispheres 161.4
2656 Male, age 76, both hemispheres 130.4
2307 Male, age 80, both hemispheres 107.8
Parvicellular reticular nuclei
nTPM: 132.5
2119 Male, age 80, both hemispheres 167.0
2095 Male, age 76, both hemispheres 151.1
2558 Male, age 74, both hemispheres 79.4
Parvicellular reticular nuclei, medullary
nTPM: 125.8
2091 Female, age 85, both hemispheres 133.6
2181 Male, age 80, left hemisphere 124.0
2189 Female, age 91, both hemispheres 119.7
Peritrigeminal nucleus
nTPM: 192.9
2067 Female, age 85, both hemispheres 213.9
2136 Male, age 76, both hemispheres 213.5
2179 Male, age 61, both hemispheres 151.2
Prepositus hypoglossal nucleus
nTPM: 167.7
2086 Male, age 80, both hemispheres 169.5
2855 Female, age 85, right hemisphere 165.8
Spinal trigeminal nucleus, caudal
nTPM: 145.6
2447 Male, age 76, both hemispheres 163.1
2308 Male, age 80, both hemispheres 147.4
2312 Male, age 61, both hemispheres 145.6
2642 Male, age 74, both hemispheres 138.0
2390 Female, age 91, both hemispheres 133.7
Spinal trigeminal nucleus, interpolar
nTPM: 138.0
2625 Male, age 61, both hemispheres 160.2
2033 Male, age 80, both hemispheres 156.6
2066 Male, age 76, right hemisphere 145.1
2389 Female, age 91, both hemispheres 116.6
2386 Female, age 85, both hemispheres 111.4
Spinal vestibular nucleus
nTPM: 149.9
2384 Male, age 74, both hemispheres 164.3
2806 Female, age 85, both hemispheres 156.2
2748 Male, age 76, both hemispheres 152.3
2796 Male, age 61, both hemispheres 149.9
2780 Male, age 80, both hemispheres 146.3
2186 Female, age 91, both hemispheres 130.2
Superior vestibular nucleus
nTPM: 189.8
2383 Male, age 74, both hemispheres 199.1
2061 Male, age 76, both hemispheres 187.9
2015 Male, age 80, both hemispheres 182.5
Ventral medullary reticular nucleus
nTPM: 182.3
2372 Male, age 61, both hemispheres 233.4
2060 Male, age 76, both hemispheres 131.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 182.7
2302 Female, age 91, both hemispheres 199.2
2180 Male, age 61, both hemispheres 198.7
1986 Male, age 76, both hemispheres 189.8
2118 Male, age 80, both hemispheres 167.9
2741 Female, age 85, both hemispheres 158.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 226.6
FF:10155-103A2 76 years, female 272.9
FF:10038-101F2 18-64 years, mixed 231.0
FF:10174-103C3 60 years, female 176.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 76.4
Samples: 4

Max nTPM: 90.6
Min nTPM: 62.9
Sample A Female 62.9
Sample B Female 70.6
Sample C Male 81.6
Sample D Male 90.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.6
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org