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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:435.8 nTPM
HPA Brain:255.0 nTPM
GTEx:435.8 nTPM
FANTOM5:311.7 Scaled Tags Per Million
Pig:109.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 255.0
1981 Female, age 72, midline 330.4
2048 Male, age 55, midline 318.2
2565 Male, age 75, midline 247.6
2816 Male, age 47, midline 204.9
2194 Female, age 79, both hemispheres 173.8
Cervical spinal cord, dorsal horn
nTPM: 201.9
2173 Female, age 72, unknown 347.1
2296 Male, age 66, both hemispheres 226.0
2069 Male, age 47, both hemispheres 194.1
1877 Male, age 55, unknown 180.5
2721 Male, age 90, both hemispheres 153.5
2297 Male, age 75, both hemispheres 109.9
Cervical spinal cord, ventral horn
nTPM: 243.9
2098 Female, age 72, unknown 345.1
2809 Male, age 90, both hemispheres 289.6
2480 Male, age 75, both hemispheres 268.8
2295 Male, age 66, both hemispheres 251.9
2068 Male, age 55, unknown 164.7
2820 Female, age 79, both hemispheres 143.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

435.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 435.8
Samples: 159

Max nTPM: 823.7
Min nTPM: 194.2
Std nTPM: 128.1
Median nTPM: 430.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 823.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 747.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 740.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 739.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 731.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 727.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 718.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 679.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 646.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 631.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 629.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 619.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 615.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 614.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 611.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 598.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 595.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 594.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 592.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 592.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 592.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 590.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 590.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 586.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 585.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 582.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 568.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 567.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 563.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 561.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 547.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 545.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 539.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 538.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 534.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 531.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 530.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 530.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 525.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 519.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 513.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 509.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 508.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 505.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 503.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 502.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 495.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 492.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 492.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 487.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 485.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 484.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 482.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 482.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 480.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 479.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 479.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 478.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 475.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 474.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 467.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 464.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 462.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 452.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 451.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 448.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 448.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 447.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 447.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 446.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 444.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 443.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 440.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 440.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 439.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 436.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 434.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 434.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 431.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 430.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 429.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 423.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 422.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 419.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 415.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 412.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 411.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 410.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 407.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 407.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 407.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 404.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 398.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 396.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 394.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 393.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 389.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 379.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 378.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 374.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 374.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 372.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 369.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 362.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 359.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 356.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 355.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 350.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 350.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 350.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 349.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 347.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 347.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 338.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 337.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 333.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 333.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 333.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 331.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 331.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 330.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 329.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 328.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 326.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 326.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 326.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 325.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 324.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 323.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 323.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 322.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 321.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 320.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 316.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 310.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 304.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 302.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 297.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 297.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 294.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 288.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 285.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 279.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 274.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 272.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 267.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 265.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 264.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 260.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 259.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 258.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 257.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 245.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 230.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 227.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 221.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 216.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 208.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 194.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

311.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 311.7
FF:10181-103D1 60 years, female 311.9
FF:10159-103A6 76 years, female 311.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 87.4
Samples: 4

Max nTPM: 104.4
Min nTPM: 73.2
Sample A Female 73.2
Sample B Female 87.5
Sample C Male 104.4
Sample D Male 84.4
Ventral spinal cord
nTPM: 109.7
Samples: 4

Max nTPM: 116.4
Min nTPM: 107.2
Sample A Female 107.5
Sample B Female 107.5
Sample C Male 107.2
Sample D Male 116.4

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