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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:249.9 nTPM
HPA Brain:139.1 nTPM
GTEx:249.9 nTPM
FANTOM5:200.0 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:113.2 nTPM
Allen mouse:2.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.1
Sample id Sample description nTPM
Amygdala
nTPM: 139.1
2695 Female, age 67, right hemisphere 187.0
1987 Female, age 91, left hemisphere 154.5
2814 Male, age 76, right hemisphere 136.5
2514 Male, age 75, right hemisphere 115.8
2517 Female, age 94, left hemisphere 101.4
Basal amygdala
nTPM: 92.1
2609 Male, age 75, right hemisphere 142.1
2110 Male, age 80, left hemisphere 103.0
1955 Male, age 76, both hemispheres 99.4
2243 Female, age 91, right hemisphere 73.2
2685 Female, age 94, left hemisphere 69.2
2827 Female, age 67, right hemisphere 65.6
Central amygdala
nTPM: 116.3
2515 Male, age 75, right hemisphere 161.3
2826 Female, age 94, left hemisphere 131.1
1905 Male, age 76, both hemispheres 125.9
2239 Male, age 80, left hemisphere 85.0
2701 Female, age 91, right hemisphere 78.0
Corticomedial amygdala
nTPM: 84.6
2428 Male, age 75, right hemisphere 125.9
2829 Male, age 80, left hemisphere 93.1
2242 Female, age 91, right hemisphere 85.6
2240 Male, age 76, both hemispheres 81.2
2429 Female, age 94, left hemisphere 66.4
2535 Female, age 67, right hemisphere 55.3
Lateral amygdala
nTPM: 106.6
2516 Male, age 75, right hemisphere 146.7
2256 Male, age 80, left hemisphere 123.8
1883 Male, age 76, both hemispheres 117.8
2830 Female, age 67, right hemisphere 92.9
2534 Female, age 94, left hemisphere 89.9
2255 Female, age 91, right hemisphere 68.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 249.9
Samples: 152

Max nTPM: 641.6
Min nTPM: 55.0
Std nTPM: 86.3
Median nTPM: 236.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 641.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 520.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 500.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 481.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 476.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 464.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 458.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 410.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 401.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 393.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 391.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 390.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 365.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 363.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 361.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 351.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 349.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 346.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 334.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 334.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 333.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 326.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 320.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 313.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 310.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 310.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 308.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 305.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 305.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 301.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 299.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 297.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 293.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 292.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 292.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 292.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 289.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 289.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 284.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 283.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 282.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 282.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 280.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 279.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 278.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 274.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 268.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 266.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 266.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 265.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 264.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 263.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 263.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 262.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 262.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 261.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 261.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 260.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 260.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 257.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 254.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 253.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 253.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 252.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 251.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 250.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 250.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 250.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 249.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 242.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 241.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 241.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 241.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 240.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 237.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 237.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 236.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 235.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 235.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 235.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 234.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 233.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 232.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 232.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 229.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 227.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 222.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 221.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 219.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 218.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 218.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 217.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 217.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 217.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 216.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 214.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 213.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 213.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 213.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 208.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 208.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 207.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 204.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 204.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 203.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 202.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 201.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 199.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 198.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 198.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 197.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 197.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 195.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 195.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 194.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 188.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 186.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 185.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 184.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 181.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 180.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 180.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 175.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 175.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 174.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 169.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 169.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 168.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 166.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 163.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 157.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 156.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 155.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 152.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 140.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 136.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 127.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 123.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 55.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 200.0
FF:10151-102I7 76 years, female 200.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.0
Pig sample Sample description nTPM
Amygdala
nTPM: 38.0
Samples: 4

Max nTPM: 44.1
Min nTPM: 31.3
Sample A Female 44.1
Sample B Female 40.1
Sample C Male 36.3
Sample D Male 31.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 113.2
Samples: 4

Max nTPM: 148.8
Min nTPM: 94.5
Sample A Male 100.9
Sample B Male 108.6
Sample C Female 148.8
Sample D Female 94.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 2.3

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