BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:243.8 nTPM
HPA Brain:169.5 nTPM
GTEx:243.8 nTPM
FANTOM5:223.4 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:119.6 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB019377
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 169.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.1
2481 Female, age 94, left hemisphere 128.1
2288 Male, age 75, left hemisphere 127.6
2289 Male, age 61, right hemisphere 101.9
1857 Female, age 85, left hemisphere 99.9
2290 Female, age 72, unknown 90.9
1854 Male, age 80, left hemisphere 88.1
2846 Female, age 79, unknown 76.7
1781 Male, age 74, unknown 71.6
Globus pallidus, externus
nTPM: 169.5
1996 Male, age 80, right hemisphere 234.5
2772 Female, age 79, unknown 190.0
2646 Male, age 61, right hemisphere 163.9
2395 Male, age 75, both hemispheres 133.9
2567 Female, age 72, unknown 125.4
Globus pallidus, internus
nTPM: 160.4
2037 Male, age 80, right hemisphere 187.8
1818 Male, age 74, unknown 176.9
2111 Female, age 85, right hemisphere 172.0
2483 Female, age 94, right hemisphere 168.0
2287 Male, age 75, right hemisphere 150.1
2778 Female, age 91, both hemispheres 148.8
2566 Female, age 72, unknown 119.4
Nucleus accumbens
nTPM: 89.3
2286 Male, age 75, left hemisphere 121.4
2732 Male, age 80, right hemisphere 118.5
2391 Female, age 94, left hemisphere 102.8
2698 Female, age 72, unknown 96.7
1806 Female, age 85, left hemisphere 95.7
1783 Male, age 74, unknown 63.9
1856 Female, age 91, right hemisphere 57.9
2824 Male, age 61, right hemisphere 57.1
Nucleus basalis of Meynert
nTPM: 123.9
2569 Male, age 61, both hemispheres 204.8
2393 Male, age 80, right hemisphere 112.5
2484 Female, age 94, left hemisphere 97.4
2821 Male, age 75, both hemispheres 80.8
Nucleus of the diagonal band
nTPM: 78.9
1812 Female, age 91, both hemispheres 116.1
1979 Male, age 74, unknown 91.0
2775 Male, age 80, right hemisphere 72.7
2195 Female, age 85, both hemispheres 57.8
2029 Male, age 61, right hemisphere 56.8
Putamen
nTPM: 93.9
2647 Male, age 75, left hemisphere 142.8
1829 Male, age 74, unknown 111.2
2482 Female, age 94, left hemisphere 109.3
2489 Female, age 72, unknown 94.7
2466 Female, age 79, unknown 74.7
1838 Male, age 80, right hemisphere 62.5
1937 Female, age 91, right hemisphere 62.0
Septal nuclei
nTPM: 99.6
2199 Male, age 80, right hemisphere 144.6
2394 Male, age 61, left hemisphere 118.7
2059 Female, age 85, both hemispheres 99.7
2009 Female, age 91, both hemispheres 95.5
2629 Female, age 94, right hemisphere 86.5
2031 Female, age 72, unknown 84.3
1960 Male, age 74, unknown 67.9
Stria terminalis, bed nucleus
nTPM: 67.0
2201 Male, age 74, unknown 84.2
1974 Female, age 91, both hemispheres 64.2
2486 Female, age 94, both hemispheres 52.6

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 243.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 224.7
Samples: 246

Max nTPM: 561.9
Min nTPM: 97.4
Std nTPM: 80.8
Median nTPM: 204.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 561.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 547.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 465.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 445.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 418.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 411.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 407.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 401.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 401.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 387.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 376.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 193.8
Samples: 246

Max nTPM: 521.8
Min nTPM: 71.1
Std nTPM: 83.1
Median nTPM: 174.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 521.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 490.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 473.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 469.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 403.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 391.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 388.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 386.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 379.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 372.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 371.3
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Brain - Putamen (basal ganglia)
Average nTPM: 243.8
Samples: 205

Max nTPM: 626.8
Min nTPM: 84.1
Std nTPM: 93.4
Median nTPM: 221.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 626.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 613.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 515.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 511.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 475.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 468.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 457.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 443.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 421.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 416.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 411.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 223.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 137.1
FF:10164-103B2 76 years, female 137.1
Nucleus accumbens
Scaled Tags Per Million: 116.1
FF:10037-101F1 23-56 years, mixed 116.1
Putamen
Scaled Tags Per Million: 91.6
FF:10176-103C5 60 years, female 91.6
Globus pallidus
Scaled Tags Per Million: 223.4
FF:10161-103A8 76 years, female 265.5
FF:10175-103C4 60 years, female 181.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 44.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.1
Samples: 4

Max nTPM: 45.3
Min nTPM: 33.3
Sample A Female 35.7
Sample B Female 34.2
Sample C Male 45.3
Sample D Male 33.3
Putamen
nTPM: 44.6
Samples: 4

Max nTPM: 56.6
Min nTPM: 32.9
Sample A Female 56.6
Sample B Female 32.9
Sample C Male 51.5
Sample D Male 37.5
Septum
nTPM: 36.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.7
Sample A Female 40.1
Sample B Female 30.7
Sample C Male 40.8
Sample D Male 35.9
Ventral pallidum
nTPM: 35.9
Samples: 4

Max nTPM: 40.7
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 37.7
Sample C Male 40.7
Sample D Male 34.5

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 119.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 119.6
Samples: 4

Max nTPM: 129.4
Min nTPM: 105.6
Sample A Male 114.3
Sample B Male 129.4
Sample C Female 105.6
Sample D Female 129.1
Septum
nTPM: 116.9
Samples: 4

Max nTPM: 124.0
Min nTPM: 107.7
Sample A Male 107.7
Sample B Male 124.0
Sample C Female 111.9
Sample D Female 124.0
Ventral forebrain
nTPM: 89.3
Samples: 4

Max nTPM: 99.2
Min nTPM: 83.0
Sample A Male 83.0
Sample B Male 84.1
Sample C Female 99.2
Sample D Female 90.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.9
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 0.9

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