We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CDK2AP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CDK2AP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:224.7 nTPM
FANTOM5:137.1 Scaled Tags Per Million
Pig:37.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB019377
Glial cells Medium
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 224.7
Samples: 246

Max nTPM: 561.9
Min nTPM: 97.4
Std nTPM: 80.8
Median nTPM: 204.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 561.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 547.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 465.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 445.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 418.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 411.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 407.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 401.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 401.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 387.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 376.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 373.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 373.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 367.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 364.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 363.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 356.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 353.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 352.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 350.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 347.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 343.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 340.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 335.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 333.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 333.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 331.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 329.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 326.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 323.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 318.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 317.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 317.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 315.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 314.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 314.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 310.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 308.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 308.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 306.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 303.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 301.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 300.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 297.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 295.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 295.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 295.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 293.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 292.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 292.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 291.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 289.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 289.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 289.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 288.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 288.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 281.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 279.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 274.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 273.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 272.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 272.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 270.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 268.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 268.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 263.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 262.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 260.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 260.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 259.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 259.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 257.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 257.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 257.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 256.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 255.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 254.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 254.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 253.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 252.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 250.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 249.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 249.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 249.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 247.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 247.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 247.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 243.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 242.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 241.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 240.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 239.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 239.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 238.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 238.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 238.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 237.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 234.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 232.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 231.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 230.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 229.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 229.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 228.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 227.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 227.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 226.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 223.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 221.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 219.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 219.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 214.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 212.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 211.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 210.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 209.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 209.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 208.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 208.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 206.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 205.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 204.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 203.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 203.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 202.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 201.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 200.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 200.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 199.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 198.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 198.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 197.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 197.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 197.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 194.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 193.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 192.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 191.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 190.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 189.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 188.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 188.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 187.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 185.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 184.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 184.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 183.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 182.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 182.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 182.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 181.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 181.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 181.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 181.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 180.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 179.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 179.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 179.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 178.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 177.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 176.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 176.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 175.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 175.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 175.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 175.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 174.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 174.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 174.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 174.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 173.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 173.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 173.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 172.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 171.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 171.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 169.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 169.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 169.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 167.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 166.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 165.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 163.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 162.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 161.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 159.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 159.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 158.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 158.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 158.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 157.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 157.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 157.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 156.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 155.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 153.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 153.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 151.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 150.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 149.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 149.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 146.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 146.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 145.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 145.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 145.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 144.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 144.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 144.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 144.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 143.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 143.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 141.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 140.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 139.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 139.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 138.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 137.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 137.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 135.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 135.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 132.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 131.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 130.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 129.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 129.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 126.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 123.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 122.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 119.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 117.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 114.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 114.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 101.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 97.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 137.1
FF:10164-103B2 76 years, female 137.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
Pig sample Sample description nTPM
Caudate
nTPM: 37.1
Samples: 4

Max nTPM: 45.3
Min nTPM: 33.3
Sample A Female 35.7
Sample B Female 34.2
Sample C Male 45.3
Sample D Male 33.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org