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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:606.1 nTPM
GTEx:606.1 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:229.4 nTPM
Mouse:1690.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

606.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 606.1
Samples: 105

Max nTPM: 1561.5
Min nTPM: 148.3
Std nTPM: 261.7
Median nTPM:
218_1 71 years, female 1561.5
386_1 76 years, male 1310.8
379_1 60 years, male 1250.8
237_1 82 years, male 1144.9
6_1 73 years, female 1143.4
173_1 67 years, male 1142.3
375_1 74 years, female 1134.7
447_1 81 years, male 1083.2
322_1 76 years, male 1061.7
384_1 83 years, male 1005.2
347_1 72 years, male 985.0
307_1 66 years, female 972.5
316_1 62 years, male 937.7
145_1 84 years, male 881.5
120_1 70 years, female 881.0
35_1 74 years, female 854.7
319_1 81 years, male 850.2
452_1 88 years, female 850.1
350_1 84 years, female 847.6
17_1 71 years, male 820.6
4_1 88 years, female 818.8
295_1 61 years, female 796.1
321_1 62 years, female 795.7
354_1 81 years, female 783.4
351_1 91 years, male 744.2
506_1 65 years, male 742.1
42_1 85 years, male 737.6
117_1 61 years, male 714.5
317_1 60 years, male 692.6
353_1 82 years, female 688.6
2_1 77 years, female 686.7
348_1 84 years, male 675.0
318_1 68 years, male 670.2
291_1 76 years, male 666.2
243_1 75 years, male 663.3
377_1 82 years, female 654.5
308_1 70 years, female 654.4
389_1 86 years, female 644.1
320_1 89 years, female 640.9
137_1 83 years, male 629.4
518_1 75 years, female 629.0
99_1 64 years, male 619.4
396_1 62 years, male 617.5
41_1 94 years, female 609.5
119_1 70 years, female 583.5
311_1 78 years, male 577.4
163_1 78 years, male 565.7
139_1 64 years, female 564.7
355_1 70 years, female 564.3
335_1 73 years, female 552.0
18_1 88 years, male 551.7
495_1 57 years, female 551.3
288_1 66 years, female 549.2
376_1 75 years, female 543.9
349_1 83 years, male 541.7
425_1 59 years, female 528.6
264_1 73 years, female 525.4
315_1 62 years, female 520.8
126_1 63 years, male 518.0
405_1 91 years, male 514.3
313_1 79 years, female 508.1
172_1 72 years, female 503.8
177_1 74 years, male 502.0
265_1 87 years, male 499.6
314_1 67 years, male 498.7
115_1 83 years, male 495.9
404_1 82 years, female 484.6
526_1 61 years, male 482.3
189_1 76 years, male 480.2
153_1 70 years, female 477.8
480_1 63 years, male 476.7
142_1 61 years, female 470.4
293_1 68 years, female 470.4
43_1 64 years, female 468.2
394_1 75 years, female 466.5
356_1 87 years, female 463.5
406_1 79 years, male 453.5
324_1 76 years, male 445.0
292_1 71 years, male 439.0
352_1 62 years, male 424.3
503_1 68 years, male 416.7
109_1 81 years, female 413.4
162_1 79 years, female 410.9
254_1 77 years, female 403.7
517_1 88 years, male 399.3
246_1 77 years, male 399.0
251_1 78 years, male 380.5
81_1 67 years, male 371.9
468_1 89 years, male 366.8
286_1 68 years, female 361.7
490_1 67 years, female 349.4
501_1 88 years, male 340.3
499_1 55 years, female 330.8
9_1 66 years, female 328.5
217_1 76 years, male 326.8
491_1 89 years, female 309.1
229_1 69 years, female 308.3
89_1 63 years, male 306.1
266_1 85 years, male 289.3
32_1 67 years, male 248.6
466_1 57 years, female 224.9
415_1 77 years, female 222.3
149_1 88 years, male 215.9
414_1 84 years, female 213.4
413_1 59 years, female 148.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 28.0
FF:10030-101E3 24-65 years, mixed 28.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.4
Pig sample Sample description nTPM
Retina
nTPM: 229.4
Samples: 4

Max nTPM: 253.1
Min nTPM: 205.6
Sample A Female 206.1
Sample B Female 252.6
Sample C Male 253.1
Sample D Male 205.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1690.2
Mouse sample Sample description nTPM
Retina
nTPM: 1690.3
Samples: 4

Max nTPM: 1797.6
Min nTPM: 1516.1
Sample A Male 1784.4
Sample B Male 1662.9
Sample C Female 1797.6
Sample D Female 1516.1

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