MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:245.9 nTPM
HPA Brain:129.0 nTPM
GTEx:245.9 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:33.7 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.9
2586 Male, age 75, left hemisphere 126.8
2411 Female, age 72, unknown 114.0
1827 Male, age 72, unknown 109.6
1870 Female, age 42, unknown 107.7
2019 Male, age 18, unknown 102.8
1833 Male, age 53, unknown 99.4
2219 Male, age 76, both hemispheres 97.5
1830 Male, age 51, unknown 92.5
2666 Male, age 74, left hemisphere 89.8
2828 Female, age 72, unknown 88.8
Dorsal raphe nucleus
nTPM: 112.2
2298 Female, age 72, unknown 134.7
2047 Male, age 72, unknown 113.3
1828 Male, age 53, unknown 107.3
2750 Male, age 76, both hemispheres 105.7
2016 Female, age 72, unknown 100.2
Inferior colliculus
nTPM: 129.0
2097 Female, age 72, unknown 139.5
1848 Female, age 42, unknown 129.4
2849 Male, age 72, unknown 125.9
1890 Male, age 53, unknown 121.2
Median raphe nucleus
nTPM: 104.9
2220 Male, age 76, midline 104.9
Periaquaductal grey, anterior
nTPM: 123.3
2502 Female, age 75, unknown 142.0
1947 Male, age 18, unknown 119.0
1795 Male, age 51, unknown 109.0
Periaquaductal grey, dorsal
nTPM: 99.6
1840 Male, age 53, unknown 106.5
2464 Female, age 72, unknown 105.4
2850 Male, age 76, both hemispheres 96.3
1831 Male, age 72, unknown 90.0
Periaquaductal grey, lateral
nTPM: 88.9
2140 Male, age 76, both hemispheres 97.1
2053 Male, age 18, unknown 85.5
2272 Male, age 74, both hemispheres 84.2
Pretectal area
nTPM: 102.4
2224 Female, age 72, unknown 125.9
1817 Female, age 42, unknown 119.7
2007 Male, age 72, unknown 113.9
2316 Male, age 76, right hemisphere 111.6
2825 Male, age 18, unknown 109.7
1816 Male, age 51, unknown 106.2
1944 Female, age 72, unknown 102.5
1815 Male, age 53, unknown 96.7
2667 Female, age 75, unknown 90.2
2273 Male, age 74, both hemispheres 82.5
2407 Male, age 75, both hemispheres 66.9
Red nucleus
nTPM: 106.0
2503 Female, age 72, unknown 122.6
1821 Female, age 72, unknown 118.2
2588 Male, age 74, left hemisphere 115.1
2785 Male, age 18, unknown 115.0
2227 Male, age 72, unknown 113.2
2769 Male, age 72, unknown 112.8
2725 Female, age 75, unknown 103.8
1904 Male, age 53, unknown 98.2
1954 Female, age 42, unknown 97.6
1865 Male, age 51, unknown 95.1
2823 Male, age 76, right hemisphere 91.0
2584 Male, age 75, left hemisphere 89.6
Substantia nigra
nTPM: 98.6
1916 Female, age 42, unknown 124.2
1851 Male, age 51, unknown 115.2
2665 Male, age 74, both hemispheres 110.0
1889 Female, age 72, unknown 106.6
2699 Male, age 18, unknown 97.5
2241 Male, age 72, unknown 95.8
1941 Male, age 53, unknown 93.8
2590 Female, age 75, unknown 89.6
2583 Male, age 75, right hemisphere 79.1
2409 Female, age 72, unknown 74.1
Superior colliculus
nTPM: 101.9
1796 Male, age 53, unknown 123.7
1895 Male, age 76, right hemisphere 116.9
2587 Male, age 74, left hemisphere 111.8
2668 Female, age 75, unknown 107.8
1839 Male, age 51, unknown 106.3
2664 Male, age 75, both hemispheres 99.4
2087 Female, age 72, unknown 93.2
2261 Male, age 18, unknown 90.5
1913 Female, age 42, unknown 86.8
1995 Male, age 72, unknown 82.3
Ventral tegmental area
nTPM: 109.6
1915 Female, age 42, unknown 120.3
1942 Male, age 51, unknown 115.3
2021 Male, age 53, unknown 110.4
2410 Female, age 72, unknown 107.7
2218 Male, age 76, both hemispheres 103.7
2223 Female, age 72, unknown 100.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 245.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 245.9
Samples: 139

Max nTPM: 614.4
Min nTPM: 140.6
Std nTPM: 72.3
Median nTPM: 233.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 614.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 505.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 478.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 470.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 395.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 367.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 365.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 357.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 355.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 348.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 347.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 15.2
Sample A Female 55.7
Sample B Female 34.6
Sample C Male 31.4
Sample D Male 15.2
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 31.0
Sample A Female 33.8
Sample B Female 38.5
Sample C Male 37.4
Sample D Male 31.0
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 30.2
Min nTPM: 19.4
Sample B Female 30.2
Sample C Male 26.9
Sample D Male 19.4
Superior colliculi
nTPM: 44.0
Samples: 4

Max nTPM: 63.9
Min nTPM: 28.2
Sample A Female 63.9
Sample B Female 47.5
Sample C Male 36.5
Sample D Male 28.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 46.1
Min nTPM: 24.7
Sample A Male 46.1
Sample B Male 28.6
Sample C Female 24.7
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
386251 Antisense, RP_040804_01_E02, Mouse strain C57BL/6J (56 days, male) 2.1

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