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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:229.6 nTPM
HPA Brain:135.7 nTPM
GTEx:229.6 nTPM
FANTOM5:204.0 Scaled Tags Per Million
Pig:165.9 nTPM
Mouse:177.7 nTPM
Allen mouse:21.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.7
Sample id Sample description nTPM
Amygdala
nTPM: 135.7
2814 Male, age 76, right hemisphere 199.5
2514 Male, age 75, right hemisphere 140.0
1987 Female, age 91, left hemisphere 128.9
2695 Female, age 67, right hemisphere 111.8
2517 Female, age 94, left hemisphere 98.2
Basal amygdala
nTPM: 101.4
1955 Male, age 76, both hemispheres 141.6
2609 Male, age 75, right hemisphere 116.7
2110 Male, age 80, left hemisphere 108.1
2243 Female, age 91, right hemisphere 103.4
2685 Female, age 94, left hemisphere 82.2
2827 Female, age 67, right hemisphere 56.4
Central amygdala
nTPM: 112.1
1905 Male, age 76, both hemispheres 159.7
2515 Male, age 75, right hemisphere 117.6
2239 Male, age 80, left hemisphere 104.2
2701 Female, age 91, right hemisphere 96.9
2826 Female, age 94, left hemisphere 82.0
Corticomedial amygdala
nTPM: 112.6
2240 Male, age 76, both hemispheres 140.4
2428 Male, age 75, right hemisphere 131.5
2829 Male, age 80, left hemisphere 122.5
2242 Female, age 91, right hemisphere 111.9
2429 Female, age 94, left hemisphere 107.1
2535 Female, age 67, right hemisphere 62.4
Lateral amygdala
nTPM: 95.4
1883 Male, age 76, both hemispheres 151.8
2516 Male, age 75, right hemisphere 111.1
2534 Female, age 94, left hemisphere 86.6
2256 Male, age 80, left hemisphere 82.6
2255 Female, age 91, right hemisphere 72.7
2830 Female, age 67, right hemisphere 68.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 229.6
Samples: 152

Max nTPM: 548.3
Min nTPM: 151.6
Std nTPM: 67.4
Median nTPM: 210.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 548.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 507.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 472.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 420.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 420.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 416.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 394.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 383.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 380.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 354.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 353.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 339.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 331.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 323.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 321.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 313.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 309.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 291.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 288.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 286.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 283.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 282.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 281.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 280.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 276.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 272.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 266.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 264.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 255.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 253.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 248.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 247.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 247.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 247.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 245.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 244.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 244.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 242.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 240.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 238.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 238.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 238.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 237.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 236.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 236.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 235.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 233.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 232.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 231.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 228.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 227.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 224.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 224.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 223.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 223.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 222.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 220.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 220.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 219.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 219.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 219.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 218.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 218.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 218.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 217.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 215.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 215.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 215.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 214.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 213.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 212.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 211.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 210.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 210.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 209.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 209.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 208.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 208.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 208.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 207.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 207.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 206.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 205.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 204.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 203.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 202.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 202.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 202.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 202.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 200.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 199.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 196.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 195.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 194.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 194.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 194.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 193.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 192.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 192.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 191.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 191.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 191.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 190.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 190.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 189.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 189.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 186.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 185.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 184.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 184.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 183.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 183.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 182.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 181.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 181.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 181.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 180.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 180.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 180.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 179.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 176.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 176.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 174.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 171.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 170.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 170.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 169.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 165.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 164.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 157.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 157.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 151.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.0
FF:10151-102I7 76 years, female 204.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.9
Pig sample Sample description nTPM
Amygdala
nTPM: 166.0
Samples: 4

Max nTPM: 205.1
Min nTPM: 140.5
Sample A Female 205.1
Sample B Female 170.5
Sample C Male 147.7
Sample D Male 140.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 177.7
Samples: 4

Max nTPM: 190.5
Min nTPM: 163.0
Sample A Male 163.0
Sample B Male 175.2
Sample C Female 190.5
Sample D Female 182.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.0
69885624 Antisense, RP_050512_03_A07, Mouse strain C57BL/6J (56 days, male) 21.0

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