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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:202.4 nTPM
HPA Brain:143.3 nTPM
GTEx:202.4 nTPM
FANTOM5:170.1 Scaled Tags Per Million
Pig:200.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.1
1981 Female, age 72, midline 144.2
2048 Male, age 55, midline 120.3
2194 Female, age 79, both hemispheres 99.4
2565 Male, age 75, midline 98.2
2816 Male, age 47, midline 88.5
Cervical spinal cord, dorsal horn
nTPM: 143.3
2296 Male, age 66, both hemispheres 172.6
2069 Male, age 47, both hemispheres 159.7
2173 Female, age 72, unknown 156.6
1877 Male, age 55, unknown 132.1
2297 Male, age 75, both hemispheres 126.0
2721 Male, age 90, both hemispheres 112.6
Cervical spinal cord, ventral horn
nTPM: 125.8
2098 Female, age 72, unknown 172.6
2480 Male, age 75, both hemispheres 144.4
2809 Male, age 90, both hemispheres 133.4
2295 Male, age 66, both hemispheres 118.8
2068 Male, age 55, unknown 102.8
2820 Female, age 79, both hemispheres 83.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 202.4
Samples: 159

Max nTPM: 552.8
Min nTPM: 124.6
Std nTPM: 52.7
Median nTPM: 193.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 552.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 429.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 343.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 337.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 320.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 318.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 301.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 301.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 298.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 271.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 269.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 267.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 264.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 264.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 263.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 259.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 256.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 255.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 249.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 248.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 247.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 244.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 244.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 243.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 241.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 241.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 239.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 238.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 230.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 227.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 227.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 225.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 224.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 221.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 220.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 217.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 216.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 216.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 216.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 216.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 216.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 215.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 215.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 215.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 215.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 214.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 213.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 212.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 211.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 210.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 210.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 209.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 209.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 209.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 208.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 207.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 207.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 206.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 206.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 206.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 204.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 204.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 203.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 203.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 202.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 201.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 201.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 200.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 199.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 199.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 198.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 198.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 198.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 194.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 194.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 194.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 193.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 192.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 192.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 192.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 191.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 189.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 188.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 188.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 188.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 187.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 187.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 187.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 187.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 186.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 185.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 185.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 184.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 181.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 181.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 181.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 180.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 180.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 179.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 179.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 179.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 178.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 178.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 177.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 176.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 176.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 175.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 174.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 171.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 170.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 168.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 168.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 167.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 166.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 165.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 163.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 162.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 162.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 161.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 161.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 161.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 161.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 161.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 161.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 160.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 160.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 160.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 158.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 158.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 157.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 157.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 157.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 156.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 153.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 151.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 151.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 151.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 146.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 146.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 138.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 137.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 135.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 129.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

170.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 170.1
FF:10181-103D1 60 years, female 181.0
FF:10159-103A6 76 years, female 159.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 179.5
Samples: 4

Max nTPM: 193.9
Min nTPM: 169.7
Sample A Female 171.1
Sample B Female 193.9
Sample C Male 183.1
Sample D Male 169.7
Ventral spinal cord
nTPM: 200.0
Samples: 4

Max nTPM: 211.1
Min nTPM: 183.0
Sample A Female 183.0
Sample B Female 208.9
Sample C Male 197.1
Sample D Male 211.1

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