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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:603.3 nTPM
HPA Brain:251.8 nTPM
GTEx:603.3 nTPM
FANTOM5:617.7 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:494.8 nTPM
Allen mouse:20.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.8
Sample id Sample description nTPM
Amygdala
nTPM: 251.8
2814 Male, age 76, right hemisphere 289.1
2514 Male, age 75, right hemisphere 273.9
1987 Female, age 91, left hemisphere 261.8
2695 Female, age 67, right hemisphere 231.9
2517 Female, age 94, left hemisphere 202.4
Basal amygdala
nTPM: 225.3
2243 Female, age 91, right hemisphere 275.6
1955 Male, age 76, both hemispheres 260.9
2110 Male, age 80, left hemisphere 255.7
2609 Male, age 75, right hemisphere 232.5
2685 Female, age 94, left hemisphere 202.4
2827 Female, age 67, right hemisphere 124.5
Central amygdala
nTPM: 233.6
1905 Male, age 76, both hemispheres 277.0
2239 Male, age 80, left hemisphere 261.5
2701 Female, age 91, right hemisphere 232.6
2515 Male, age 75, right hemisphere 217.9
2826 Female, age 94, left hemisphere 179.0
Corticomedial amygdala
nTPM: 239.4
2240 Male, age 76, both hemispheres 283.0
2242 Female, age 91, right hemisphere 279.7
2829 Male, age 80, left hemisphere 278.1
2429 Female, age 94, left hemisphere 228.7
2428 Male, age 75, right hemisphere 221.8
2535 Female, age 67, right hemisphere 145.2
Lateral amygdala
nTPM: 195.4
1883 Male, age 76, both hemispheres 267.3
2516 Male, age 75, right hemisphere 233.3
2534 Female, age 94, left hemisphere 178.4
2256 Male, age 80, left hemisphere 176.4
2255 Female, age 91, right hemisphere 167.0
2830 Female, age 67, right hemisphere 150.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

603.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 603.3
Samples: 152

Max nTPM: 1544.5
Min nTPM: 346.3
Std nTPM: 191.9
Median nTPM: 562.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1544.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1480.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1316.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1069.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1066.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1043.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1030.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1007.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 971.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 938.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 902.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 886.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 852.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 838.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 834.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 823.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 803.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 801.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 774.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 761.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 759.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 744.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 736.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 734.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 728.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 716.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 713.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 711.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 709.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 690.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 677.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 671.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 671.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 667.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 666.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 660.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 659.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 659.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 659.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 659.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 656.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 655.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 654.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 651.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 649.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 644.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 640.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 640.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 637.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 635.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 632.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 630.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 630.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 624.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 619.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 617.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 616.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 614.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 602.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 599.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 596.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 596.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 595.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 594.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 590.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 590.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 590.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 576.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 575.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 574.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 574.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 571.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 568.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 565.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 565.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 565.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 559.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 558.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 556.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 556.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 553.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 551.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 549.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 547.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 545.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 544.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 541.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 537.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 535.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 535.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 531.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 531.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 528.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 525.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 521.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 518.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 509.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 508.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 508.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 506.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 505.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 504.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 497.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 497.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 496.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 492.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 491.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 490.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 490.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 489.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 484.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 481.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 480.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 480.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 480.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 479.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 476.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 474.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 469.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 466.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 466.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 465.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 459.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 458.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 458.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 456.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 456.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 455.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 455.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 452.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 445.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 435.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 431.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 430.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 427.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 423.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 422.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 418.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 417.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 415.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 413.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 409.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 407.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 404.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 401.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 399.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 393.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 380.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 376.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 375.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 357.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 346.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

617.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 617.7
FF:10151-102I7 76 years, female 617.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.1
Pig sample Sample description nTPM
Amygdala
nTPM: 3.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.0
Sample C Male 4.5
Sample D Male 4.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

494.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 494.9
Samples: 4

Max nTPM: 519.4
Min nTPM: 483.2
Sample A Male 484.4
Sample B Male 519.4
Sample C Female 483.2
Sample D Female 492.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.8
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 20.8

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