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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:690.1 nTPM
HPA Brain:320.0 nTPM
GTEx:690.1 nTPM
FANTOM5:900.0 Scaled Tags Per Million
Pig:0.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 278.2
1981 Female, age 72, midline 351.8
2048 Male, age 55, midline 313.7
2194 Female, age 79, both hemispheres 247.7
2816 Male, age 47, midline 239.8
2565 Male, age 75, midline 237.8
Cervical spinal cord, dorsal horn
nTPM: 320.0
2296 Male, age 66, both hemispheres 392.0
2173 Female, age 72, unknown 364.3
2069 Male, age 47, both hemispheres 362.9
2297 Male, age 75, both hemispheres 280.3
1877 Male, age 55, unknown 261.7
2721 Male, age 90, both hemispheres 258.5
Cervical spinal cord, ventral horn
nTPM: 267.1
2098 Female, age 72, unknown 384.4
2068 Male, age 55, unknown 265.6
2295 Male, age 66, both hemispheres 252.4
2480 Male, age 75, both hemispheres 251.9
2809 Male, age 90, both hemispheres 250.2
2820 Female, age 79, both hemispheres 198.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

690.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 690.1
Samples: 159

Max nTPM: 1194.2
Min nTPM: 419.6
Std nTPM: 132.4
Median nTPM: 678.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1194.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1031.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 993.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 975.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 972.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 962.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 942.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 935.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 931.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 910.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 910.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 902.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 894.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 876.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 873.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 856.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 854.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 841.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 840.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 830.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 823.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 820.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 813.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 810.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 810.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 809.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 808.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 806.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 805.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 804.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 803.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 789.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 789.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 788.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 784.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 780.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 780.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 776.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 776.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 775.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 770.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 769.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 769.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 763.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 763.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 761.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 760.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 753.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 748.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 745.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 745.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 745.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 744.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 742.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 741.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 738.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 737.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 737.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 733.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 725.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 719.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 715.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 714.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 712.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 711.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 708.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 708.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 706.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 703.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 702.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 699.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 698.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 689.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 689.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 686.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 685.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 684.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 682.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 678.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 678.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 677.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 674.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 673.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 670.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 669.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 668.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 665.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 664.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 664.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 663.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 662.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 661.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 658.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 658.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 658.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 657.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 654.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 650.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 649.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 649.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 646.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 639.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 639.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 638.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 635.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 634.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 633.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 630.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 628.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 623.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 622.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 618.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 616.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 615.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 613.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 604.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 601.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 601.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 600.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 596.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 592.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 590.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 588.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 586.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 582.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 577.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 568.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 566.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 564.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 562.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 560.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 558.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 558.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 557.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 543.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 542.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 541.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 539.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 532.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 531.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 529.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 523.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 523.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 522.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 519.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 517.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 514.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 501.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 500.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 498.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 487.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 484.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 479.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 477.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 459.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 458.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 453.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 449.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 419.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

900.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 900.0
FF:10181-103D1 60 years, female 1094.2
FF:10159-103A6 76 years, female 705.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.3
Sample A Female 1.4
Sample B Female 0.3
Sample C Male 0.8
Sample D Male 1.0
Ventral spinal cord
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Female 0.8
Sample B Female 0.4
Sample C Male 1.3
Sample D Male 1.1

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