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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:261.4 nTPM
HPA Brain:264.1 nTPM
GTEx:261.4 nTPM
FANTOM5:257.9 Scaled Tags Per Million
Pig:103.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 201.8
2048 Male, age 55, midline 244.0
1981 Female, age 72, midline 223.7
2565 Male, age 75, midline 183.7
2816 Male, age 47, midline 179.0
2194 Female, age 79, both hemispheres 178.6
Cervical spinal cord, dorsal horn
nTPM: 188.1
2173 Female, age 72, unknown 288.0
2296 Male, age 66, both hemispheres 200.3
2069 Male, age 47, both hemispheres 177.6
2721 Male, age 90, both hemispheres 173.7
1877 Male, age 55, unknown 162.5
2297 Male, age 75, both hemispheres 126.5
Cervical spinal cord, ventral horn
nTPM: 264.1
2809 Male, age 90, both hemispheres 321.3
2480 Male, age 75, both hemispheres 299.2
2295 Male, age 66, both hemispheres 287.2
2098 Female, age 72, unknown 269.6
2068 Male, age 55, unknown 206.9
2820 Female, age 79, both hemispheres 200.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 261.4
Samples: 159

Max nTPM: 806.3
Min nTPM: 102.2
Std nTPM: 112.5
Median nTPM: 238.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 806.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 690.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 571.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 570.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 508.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 507.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 493.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 476.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 472.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 466.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 465.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 455.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 433.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 427.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 424.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 414.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 398.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 387.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 382.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 378.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 376.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 374.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 369.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 366.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 361.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 357.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 354.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 346.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 339.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 339.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 337.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 329.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 329.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 328.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 325.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 325.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 320.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 316.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 308.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 306.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 306.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 304.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 302.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 299.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 297.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 286.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 285.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 282.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 281.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 280.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 280.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 277.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 276.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 273.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 271.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 271.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 269.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 269.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 267.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 266.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 266.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 265.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 264.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 262.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 261.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 259.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 259.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 259.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 258.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 254.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 253.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 251.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 247.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 247.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 245.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 241.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 240.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 240.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 238.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 238.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 237.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 236.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 235.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 234.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 234.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 231.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 230.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 228.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 226.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 224.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 223.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 222.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 220.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 220.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 219.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 217.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 216.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 216.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 209.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 207.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 207.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 205.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 205.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 204.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 204.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 203.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 202.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 201.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 200.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 200.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 199.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 199.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 198.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 198.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 197.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 186.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 184.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 182.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 181.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 179.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 177.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 176.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 175.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 175.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 175.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 174.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 172.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 167.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 165.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 165.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 165.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 164.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 163.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 163.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 162.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 161.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 160.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 158.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 157.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 152.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 142.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 141.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 140.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 138.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 136.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 131.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 127.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 126.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 122.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 112.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 111.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 109.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 104.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 103.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 102.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 257.9
FF:10159-103A6 76 years, female 305.4
FF:10181-103D1 60 years, female 210.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.5
Samples: 4

Max nTPM: 94.9
Min nTPM: 56.3
Sample A Female 56.3
Sample B Female 79.0
Sample C Male 94.9
Sample D Male 71.8
Ventral spinal cord
nTPM: 103.3
Samples: 4

Max nTPM: 120.2
Min nTPM: 77.9
Sample A Female 114.2
Sample B Female 100.9
Sample C Male 120.2
Sample D Male 77.9

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