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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1059.1 nTPM
HPA Brain:333.9 nTPM
GTEx:1059.1 nTPM
FANTOM5:88.0 Scaled Tags Per Million
Pig:290.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.9
Sample id Sample description nTPM
Amygdala
nTPM: 333.9
2695 Female, age 67, right hemisphere 429.1
2514 Male, age 75, right hemisphere 326.8
2814 Male, age 76, right hemisphere 321.2
1987 Female, age 91, left hemisphere 299.7
2517 Female, age 94, left hemisphere 293.0
Basal amygdala
nTPM: 273.6
2827 Female, age 67, right hemisphere 337.2
2609 Male, age 75, right hemisphere 300.7
2110 Male, age 80, left hemisphere 271.8
2685 Female, age 94, left hemisphere 263.0
1955 Male, age 76, both hemispheres 235.2
2243 Female, age 91, right hemisphere 233.9
Central amygdala
nTPM: 296.9
2826 Female, age 94, left hemisphere 470.0
2515 Male, age 75, right hemisphere 288.2
1905 Male, age 76, both hemispheres 262.8
2239 Male, age 80, left hemisphere 242.4
2701 Female, age 91, right hemisphere 221.1
Corticomedial amygdala
nTPM: 259.4
2428 Male, age 75, right hemisphere 292.4
2829 Male, age 80, left hemisphere 277.3
2535 Female, age 67, right hemisphere 256.4
2429 Female, age 94, left hemisphere 247.6
2242 Female, age 91, right hemisphere 245.0
2240 Male, age 76, both hemispheres 237.8
Lateral amygdala
nTPM: 303.3
2830 Female, age 67, right hemisphere 413.5
2516 Male, age 75, right hemisphere 373.1
2534 Female, age 94, left hemisphere 340.3
1883 Male, age 76, both hemispheres 265.7
2256 Male, age 80, left hemisphere 225.6
2255 Female, age 91, right hemisphere 201.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1059.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1059.1
Samples: 152

Max nTPM: 3451.7
Min nTPM: 589.4
Std nTPM: 424.6
Median nTPM: 977.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3451.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2733.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2721.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2520.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2152.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2133.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2107.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1943.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1847.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1591.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1580.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1560.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1552.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1535.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1501.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1458.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1421.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1408.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1398.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1381.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1367.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1354.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1350.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1338.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1315.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1309.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1306.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1261.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1253.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1238.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1225.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1225.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1222.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1203.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1193.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1181.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1163.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1155.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1154.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1143.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1143.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1123.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1120.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1100.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1094.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1081.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1078.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1076.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1075.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1071.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1069.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1064.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1062.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1058.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1058.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1053.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1052.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1051.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1049.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1044.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1043.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1039.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1039.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1036.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1034.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1025.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1009.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1005.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1004.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1004.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1001.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1000.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 995.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 995.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 987.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 980.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 975.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 963.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 959.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 956.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 946.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 946.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 928.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 918.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 914.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 909.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 909.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 905.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 902.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 900.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 892.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 889.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 886.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 880.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 877.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 873.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 867.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 861.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 859.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 857.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 856.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 851.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 846.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 842.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 831.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 823.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 818.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 817.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 817.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 815.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 814.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 814.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 813.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 803.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 792.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 790.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 786.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 785.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 783.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 776.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 776.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 773.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 769.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 761.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 755.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 754.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 750.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 750.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 735.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 732.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 730.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 725.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 724.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 719.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 711.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 711.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 710.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 696.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 680.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 673.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 668.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 665.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 663.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 654.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 649.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 647.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 622.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 614.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 607.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 606.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 595.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 589.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.0
FF:10151-102I7 76 years, female 88.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.3
Pig sample Sample description nTPM
Amygdala
nTPM: 290.3
Samples: 4

Max nTPM: 350.1
Min nTPM: 184.4
Sample A Female 345.6
Sample B Female 350.1
Sample C Male 281.2
Sample D Male 184.4

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