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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:841.7 nTPM
HPA:766.4 nTPM
GTEx:841.7 nTPM
FANTOM5:100.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051653
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

766.4
overview
Male, age 65
Small intestine sample 232
nTPM: 956.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 743.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 665.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 700.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

841.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 841.7
Samples: 187

Max nTPM: 1747.6
Min nTPM: 454.8
Std nTPM: 246.5
Median nTPM: 793.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1747.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1725.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1629.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1621.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1616.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1552.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1547.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1363.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1352.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1321.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1276.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1261.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1249.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1198.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1185.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1168.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1163.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1155.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1155.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1151.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1147.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1133.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1116.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1103.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1097.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1093.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1088.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1086.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1062.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1060.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1057.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1018.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1017.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1013.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1007.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1005.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1003.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 995.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 984.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 983.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 977.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 969.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 966.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 964.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 961.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 956.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 955.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 938.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 932.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 930.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 929.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 925.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 924.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 922.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 916.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 916.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 913.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 909.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 902.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 901.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 899.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 896.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 895.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 893.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 886.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 881.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 876.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 871.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 868.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 867.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 862.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 862.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 857.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 856.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 854.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 848.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 845.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 832.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 831.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 828.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 827.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 827.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 826.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 823.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 820.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 820.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 815.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 804.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 803.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 801.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 800.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 799.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 794.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 793.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 793.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 793.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 791.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 791.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 789.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 789.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 780.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 778.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 777.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 777.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 776.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 775.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 764.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 758.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 755.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 754.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 753.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 750.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 746.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 739.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 738.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 738.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 734.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 729.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 726.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 723.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 723.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 722.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 720.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 720.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 712.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 708.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 704.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 703.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 698.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 695.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 692.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 688.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 686.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 684.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 681.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 681.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 679.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 678.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 673.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 672.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 671.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 668.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 662.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 659.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 659.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 658.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 657.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 652.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 637.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 636.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 634.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 634.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 629.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 628.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 627.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 622.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 621.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 620.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 620.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 613.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 606.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 595.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 594.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 593.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 592.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 583.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 574.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 574.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 573.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 572.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 569.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 563.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 562.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 550.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 548.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 548.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 546.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 546.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 544.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 535.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 527.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 522.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 519.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 507.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 505.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 499.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 454.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 100.5
FF:10024-101D6 15,40,85 years, mixed 100.5

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