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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:111.3 nTPM
HPA Brain:52.6 nTPM
GTEx:111.3 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:269.3 nTPM
Allen mouse:9.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.6
Sample id Sample description nTPM
Amygdala
nTPM: 52.6
2814 Male, age 76, right hemisphere 66.7
2514 Male, age 75, right hemisphere 57.9
2695 Female, age 67, right hemisphere 51.0
1987 Female, age 91, left hemisphere 47.7
2517 Female, age 94, left hemisphere 39.8
Basal amygdala
nTPM: 42.3
1955 Male, age 76, both hemispheres 49.1
2609 Male, age 75, right hemisphere 48.1
2685 Female, age 94, left hemisphere 45.0
2243 Female, age 91, right hemisphere 44.6
2110 Male, age 80, left hemisphere 43.6
2827 Female, age 67, right hemisphere 23.6
Central amygdala
nTPM: 48.8
1905 Male, age 76, both hemispheres 57.7
2826 Female, age 94, left hemisphere 54.4
2515 Male, age 75, right hemisphere 44.8
2701 Female, age 91, right hemisphere 44.8
2239 Male, age 80, left hemisphere 42.3
Corticomedial amygdala
nTPM: 42.8
2242 Female, age 91, right hemisphere 49.6
2240 Male, age 76, both hemispheres 48.8
2829 Male, age 80, left hemisphere 47.0
2428 Male, age 75, right hemisphere 41.7
2429 Female, age 94, left hemisphere 41.0
2535 Female, age 67, right hemisphere 28.9
Lateral amygdala
nTPM: 41.5
1883 Male, age 76, both hemispheres 56.7
2534 Female, age 94, left hemisphere 48.4
2516 Male, age 75, right hemisphere 45.9
2255 Female, age 91, right hemisphere 36.4
2256 Male, age 80, left hemisphere 34.6
2830 Female, age 67, right hemisphere 26.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.3
Samples: 152

Max nTPM: 206.0
Min nTPM: 64.7
Std nTPM: 22.9
Median nTPM: 109.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 206.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 205.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 170.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 166.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 153.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 149.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 147.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 143.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 143.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 143.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 141.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 139.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 136.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 134.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 132.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 130.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 129.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 128.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 127.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 127.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 125.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 124.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 123.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 122.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 122.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 121.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 121.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 118.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 116.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 115.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 114.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 114.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 113.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 112.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 112.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 112.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 112.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 111.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 110.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 110.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 110.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 110.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 108.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 108.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 106.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 106.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 106.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 106.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 105.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 105.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 105.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 103.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 102.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 102.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 101.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 100.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 99.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 98.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 96.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 96.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 92.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 90.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 89.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 89.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 88.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 88.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 87.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 84.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 83.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 80.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 78.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 76.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 71.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 70.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 67.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 132.0
FF:10151-102I7 76 years, female 132.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Pig sample Sample description nTPM
Amygdala
nTPM: 42.0
Samples: 4

Max nTPM: 57.1
Min nTPM: 32.9
Sample A Female 57.1
Sample B Female 40.9
Sample C Male 32.9
Sample D Male 37.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 269.4
Samples: 4

Max nTPM: 279.3
Min nTPM: 262.7
Sample A Male 264.5
Sample B Male 270.9
Sample C Female 262.7
Sample D Female 279.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.0
69262338 Antisense, RP_050303_02_B08, Mouse strain C57BL/6J (56 days, male) 9.0

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