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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:113.6 nTPM
FANTOM5:130.4 Scaled Tags Per Million
Pig:57.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046091
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 113.6
Samples: 246

Max nTPM: 191.4
Min nTPM: 61.0
Std nTPM: 20.0
Median nTPM: 110.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 191.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 189.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 185.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 174.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 165.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 164.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 164.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 164.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 163.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 161.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 155.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 155.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 151.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 149.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 146.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 144.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 144.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 143.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 142.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 140.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 140.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 138.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 137.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 137.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 137.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 137.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 136.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 135.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 135.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 133.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 133.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 133.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 131.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 131.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 129.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 129.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 129.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 129.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 128.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 127.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 127.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 126.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 126.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 125.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 125.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 125.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 125.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 124.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 124.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 124.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 123.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 123.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 123.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 123.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 122.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 122.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 121.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 121.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 121.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 121.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 120.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 120.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 120.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 120.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 120.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 120.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 119.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 119.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 119.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 119.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 119.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 118.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 117.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 117.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 117.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 117.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 117.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 117.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 117.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 116.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 116.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 116.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 116.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 115.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 115.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 115.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 115.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 115.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 115.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 115.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 114.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 114.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 113.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 113.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 113.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 113.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 112.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 112.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 112.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 111.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 111.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 111.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 110.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 110.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 110.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 110.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 110.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 110.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 110.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 110.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 110.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 109.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 109.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 109.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 109.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 109.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 108.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 108.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 108.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 108.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 108.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 108.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 107.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 106.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 106.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 106.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 106.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 106.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 106.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 106.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 105.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 105.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 105.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 105.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 104.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 104.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 104.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 104.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 104.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 104.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 104.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 103.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 103.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 103.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 103.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 103.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 103.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 103.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 102.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 102.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 102.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 101.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 101.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 101.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 101.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 101.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 100.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 100.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 99.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 99.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 99.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 99.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 99.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 99.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 98.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 98.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 98.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 98.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 98.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 98.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 97.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 97.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 97.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 97.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 97.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 96.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 96.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 96.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 95.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 95.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 95.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 95.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 95.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 94.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 94.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 94.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 94.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 93.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 93.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 93.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 92.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 92.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 92.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 92.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 92.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 92.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 91.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 91.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 90.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 90.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 90.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 90.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 89.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 89.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 88.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 85.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 83.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 82.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 81.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 80.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 77.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 71.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 70.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 70.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 61.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 130.4
FF:10164-103B2 76 years, female 130.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
Pig sample Sample description nTPM
Caudate
nTPM: 57.7
Samples: 4

Max nTPM: 67.1
Min nTPM: 50.1
Sample A Female 53.8
Sample B Female 59.6
Sample C Male 67.1
Sample D Male 50.1

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