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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:132.0 nTPM
HPA:132.0 nTPM
GTEx:84.9 nTPM
FANTOM5:265.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004189Antibody CAB026457
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Microvilli -Not detected
Glandular cells Low-
Goblet cells -Medium
Paneth cells -Medium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.0
overview
Male, age 65
Small intestine sample 232
nTPM: 153.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 126.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 117.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 130.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 84.9
Samples: 187

Max nTPM: 141.4
Min nTPM: 54.2
Std nTPM: 18.1
Median nTPM: 84.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 141.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 136.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 128.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 126.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 124.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 121.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 120.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 115.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 114.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 114.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 114.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 113.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 112.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 111.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 111.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 111.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 109.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 109.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 109.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 109.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 108.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 108.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 107.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 107.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 107.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 107.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 105.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 105.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 103.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 103.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 103.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 102.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 102.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 102.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 102.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 102.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 101.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 100.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 100.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 99.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 98.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 98.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 97.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 97.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 97.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 97.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 96.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 95.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 95.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 94.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 94.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 94.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 94.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 94.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 93.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 93.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 93.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 92.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 92.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 92.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 92.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 92.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 92.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 92.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 92.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 91.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 90.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 90.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 90.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 90.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 90.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 89.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 89.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 89.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 89.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 88.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 88.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 88.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 88.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 88.4
GTEX-1192X-2526-SM-59868 50-59 years, male 88.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 88.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 88.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 88.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 87.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 87.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 86.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 86.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 86.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 86.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 86.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 86.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 84.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 84.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 84.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 84.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 83.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 83.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 83.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 82.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 82.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 82.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 82.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 82.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 82.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 82.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 82.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 81.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 81.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 81.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 80.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 80.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 80.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 80.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 79.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 79.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 79.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 77.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 77.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 76.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 76.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 76.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 76.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 76.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 76.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 74.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 74.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 73.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 73.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 72.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 72.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 72.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 72.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 72.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 72.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 72.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 71.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 71.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 71.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 70.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 70.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 70.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 68.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 68.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 68.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 68.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 67.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 67.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 67.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 66.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 66.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 66.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 65.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 65.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 65.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 64.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 64.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 63.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 63.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 63.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 62.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 62.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 62.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 61.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 61.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 61.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 61.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 60.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 60.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 60.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 60.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 59.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 59.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 59.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 58.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 58.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 58.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 58.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 58.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 57.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 57.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 56.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 56.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 56.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 54.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 54.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

265.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 265.6
FF:10024-101D6 15,40,85 years, mixed 265.6

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