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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:477.0 nTPM
HPA Brain:277.4 nTPM
GTEx:477.0 nTPM
FANTOM5:302.9 Scaled Tags Per Million
Pig:188.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 204.6
2816 Male, age 47, midline 258.8
1981 Female, age 72, midline 233.9
2194 Female, age 79, both hemispheres 186.8
2048 Male, age 55, midline 177.9
2565 Male, age 75, midline 165.5
Cervical spinal cord, dorsal horn
nTPM: 277.4
2296 Male, age 66, both hemispheres 749.4
2173 Female, age 72, unknown 338.9
2069 Male, age 47, both hemispheres 246.5
1877 Male, age 55, unknown 145.1
2721 Male, age 90, both hemispheres 102.4
2297 Male, age 75, both hemispheres 81.9
Cervical spinal cord, ventral horn
nTPM: 254.6
2098 Female, age 72, unknown 383.5
2480 Male, age 75, both hemispheres 284.2
2820 Female, age 79, both hemispheres 239.7
2068 Male, age 55, unknown 238.7
2809 Male, age 90, both hemispheres 192.4
2295 Male, age 66, both hemispheres 188.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 477.0
Samples: 159

Max nTPM: 1496.2
Min nTPM: 95.4
Std nTPM: 238.9
Median nTPM: 451.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1496.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1337.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1110.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1093.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1007.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 992.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 945.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 930.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 906.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 873.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 868.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 844.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 821.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 814.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 792.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 768.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 757.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 750.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 749.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 748.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 745.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 735.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 732.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 729.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 721.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 705.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 701.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 693.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 682.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 682.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 681.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 643.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 620.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 607.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 605.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 601.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 600.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 598.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 597.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 590.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 584.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 572.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 570.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 569.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 566.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 561.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 560.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 557.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 556.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 552.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 546.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 545.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 542.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 541.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 526.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 518.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 518.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 514.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 513.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 509.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 507.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 505.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 502.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 500.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 499.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 499.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 495.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 494.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 493.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 491.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 491.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 483.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 479.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 478.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 477.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 474.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 460.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 458.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 457.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 451.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 448.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 446.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 439.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 439.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 430.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 426.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 423.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 420.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 407.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 406.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 403.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 401.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 396.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 394.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 392.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 380.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 378.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 375.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 375.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 373.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 371.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 367.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 366.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 365.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 362.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 361.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 358.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 352.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 350.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 345.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 339.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 338.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 336.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 330.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 323.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 319.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 313.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 313.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 313.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 308.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 293.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 291.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 290.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 290.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 289.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 286.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 283.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 281.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 268.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 258.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 256.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 252.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 252.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 251.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 249.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 244.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 243.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 232.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 231.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 220.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 217.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 205.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 204.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 197.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 190.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 188.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 186.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 178.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 167.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 164.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 162.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 156.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 117.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 95.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 302.9
FF:10181-103D1 60 years, female 356.3
FF:10159-103A6 76 years, female 249.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.3
Samples: 4

Max nTPM: 190.2
Min nTPM: 146.8
Sample A Female 190.2
Sample B Female 146.8
Sample C Male 164.4
Sample D Male 183.6
Ventral spinal cord
nTPM: 188.8
Samples: 4

Max nTPM: 218.7
Min nTPM: 153.3
Sample A Female 208.9
Sample B Female 153.3
Sample C Male 174.3
Sample D Male 218.7

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