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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:137.7 nTPM
HPA Brain:147.6 nTPM
GTEx:137.7 nTPM
FANTOM5:140.3 Scaled Tags Per Million
Pig:129.0 nTPM
Mouse:112.4 nTPM
Allen mouse:22.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
Sample id Sample description nTPM
Amygdala
nTPM: 147.6
2814 Male, age 76, right hemisphere 165.9
2514 Male, age 75, right hemisphere 164.3
2695 Female, age 67, right hemisphere 149.1
1987 Female, age 91, left hemisphere 137.7
2517 Female, age 94, left hemisphere 121.0
Basal amygdala
nTPM: 103.3
2110 Male, age 80, left hemisphere 121.0
1955 Male, age 76, both hemispheres 117.0
2609 Male, age 75, right hemisphere 115.4
2685 Female, age 94, left hemisphere 105.0
2243 Female, age 91, right hemisphere 89.4
2827 Female, age 67, right hemisphere 71.7
Central amygdala
nTPM: 118.9
1905 Male, age 76, both hemispheres 152.9
2515 Male, age 75, right hemisphere 124.1
2826 Female, age 94, left hemisphere 113.7
2239 Male, age 80, left hemisphere 104.6
2701 Female, age 91, right hemisphere 99.1
Corticomedial amygdala
nTPM: 103.3
2428 Male, age 75, right hemisphere 136.9
2429 Female, age 94, left hemisphere 114.3
2829 Male, age 80, left hemisphere 109.1
2240 Male, age 76, both hemispheres 100.4
2242 Female, age 91, right hemisphere 94.0
2535 Female, age 67, right hemisphere 65.0
Lateral amygdala
nTPM: 117.8
1883 Male, age 76, both hemispheres 149.4
2516 Male, age 75, right hemisphere 138.2
2534 Female, age 94, left hemisphere 121.5
2256 Male, age 80, left hemisphere 101.6
2830 Female, age 67, right hemisphere 101.3
2255 Female, age 91, right hemisphere 94.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.7
Samples: 152

Max nTPM: 298.1
Min nTPM: 70.7
Std nTPM: 29.5
Median nTPM: 132.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 298.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 221.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 216.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 213.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 212.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 201.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 191.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 190.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 183.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 181.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 181.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 180.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 179.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 174.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 172.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 170.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 165.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 163.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 162.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 162.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 159.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 159.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 159.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 156.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 155.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 155.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 154.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 153.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 150.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 150.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 150.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 150.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 148.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 148.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 148.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 147.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 147.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 147.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 145.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 145.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 144.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 142.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 142.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 141.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 141.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 140.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 139.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 138.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 138.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 135.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 133.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 133.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 133.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 133.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 132.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 132.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 132.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 132.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 131.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 130.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 130.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 129.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 128.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 127.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 127.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 126.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 126.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 125.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 124.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 123.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 123.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 123.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 122.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 121.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 121.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 120.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 120.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 119.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 119.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 118.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 116.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 115.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 115.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 114.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 114.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 113.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 111.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 110.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 109.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 108.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 107.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 105.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 105.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 104.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 99.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 97.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.3
FF:10151-102I7 76 years, female 140.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.0
Pig sample Sample description nTPM
Amygdala
nTPM: 129.0
Samples: 4

Max nTPM: 149.7
Min nTPM: 110.1
Sample A Female 149.7
Sample B Female 142.5
Sample C Male 113.8
Sample D Male 110.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 112.4
Samples: 4

Max nTPM: 123.2
Min nTPM: 99.5
Sample A Male 118.2
Sample B Male 99.5
Sample C Female 123.2
Sample D Female 108.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.1
69015793 Antisense, RP_050315_01_G01, Mouse strain C57BL/6J (56 days, male) 22.1

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